Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00674 ATGCTGCAGGACATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCCGCGAAGCCTCTCGGCGTTTCGAGGCTCCGTTCCGATACACACCATGTCACTCATAAGGTTCCAGTAGGCGATACGCCCTATGTTAGAGCAAAGAATGTTCAGTTGGTGAACAAGGATCCGGATAAGGCGATTCCTCTTTTTTGGGCCGCCATTAATGCCGGGGACAGAGTTGATAGTGCCTTGAAAGACATGGCCATTGTTATGAAGCAGCAGAATCGAGCCGAAGAAGCGATTGAAGCGATTAAATCGTTGCGAAGTCGATGCTCGGATCAGGCTCAGGAGTCTCTGGACAATATTCTTTTGGATCTATACAAGAGATGTGGAAGATTGGACGACCAGATAACTCTTTTGAAACATAAATTGTTCTTGATCCAACAAGGTTTGGCGTTCAATGGTAAGCGGACTAAAACCGCCCGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTTGAGCAAGAAGCAACTAGATTACTCGGGAACTTAGGATGGGCGCTGATGCAGCAAAACAATTATGTTGAAGCCGAAGAGGCTTATAGGAAAGCACTTTCAATTGCACCTGATAATAACAAAATGTGTAACCTTGGAATCTGTTTGATGAAACAAGGGAGAATTTCAGAGGCTAAAGCAACTCTACACAGAGTTAAGCCAGCAGTTGCCGATGGGCCAAGAGGCACAGATTCCCACCTCAAAGCTTATGAAAGAGCACAACAGATGCTCCAAGATCTTGAGTCTGAAATGATGAATGGGGGCGGCGATAGGCTCGAACAGAGGCGGCTTTTCGACGCCTTTCTCGGTTCTTCGTCGATTTGGCAACCTCAACCTTGCAAGGATCATACAACCTTTCCAACATTGCCTGTCACAAATCCTGTTAGGACAGTGATTCAAGGTGAATTTGGTGATGAGAATGTTGATACCAATTTCTTGGCAAATCAGATGGTTCTTCCTCCTCAACAGCAGAAATTCAGCTCAAAAGTTCAAGTTCCCTTCGGGGGGAACTCATTCAATGTTGCTGCTCAACCATTTTTTTCATCAAAATTATTTAGTGAACCCATTTCAAAGGCCCCCTTGGGGAACCAATTTCCTGAAGGTCTGAAGAGAACAAGGTCTGGAAATGCAGCCAATTCAATGAGAATGAATGACATGGTGGAATCAAAAAGGCCATTTGTAGTGGAATCAGGGAGGCCTGAAACTAAGACAAGAAGGTCATCTCCTACCTCTGAGGAGACAGACAAATGGGCAGAAATATTGCCTGATGACAATGATTTTGAAGAGGCTATTCTTGCTGCAGTTCTAGGCTCCACAGATGAACCAGAGAAGCAAGCAGTATCCAATGCCAGCGCCGCCGTGGACGGTGGTGGCATGATTCAAAGTAAGGTTGAGAAAAGGCTCAAGGTTTTTGAAGGCATTACACTTTCCTTGAGTCCCAGAGCCTAA 1497 45.89 MLQDMWNAPPGFRPSKSAPSSPAKPLGVSRLRSDTHHVTHKVPVGDTPYVRAKNVQLVNKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQITLLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYVEAEEAYRKALSIAPDNNKMCNLGICLMKQGRISEAKATLHRVKPAVADGPRGTDSHLKAYERAQQMLQDLESEMMNGGGDRLEQRRLFDAFLGSSSIWQPQPCKDHTTFPTLPVTNPVRTVIQGEFGDENVDTNFLANQMVLPPQQQKFSSKVQVPFGGNSFNVAAQPFFSSKLFSEPISKAPLGNQFPEGLKRTRSGNAANSMRMNDMVESKRPFVVESGRPETKTRRSSPTSEETDKWAEILPDDNDFEEAILAAVLGSTDEPEKQAVSNASAAVDGGGMIQSKVEKRLKVFEGITLSLSPRA 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5589638 5591446 - CmaCh03G006740.1 Cma03g00674 290245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00674 498 Coils Coil 246 266 - -
Cma03g00674 498 SUPERFAMILY TPR-like 51 234 IPR011990 GO:0005515
Cma03g00674 498 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Cma03g00674 498 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Cma03g00674 498 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Cma03g00674 498 SMART tpr_5 176 209 IPR019734 GO:0005515
Cma03g00674 498 Coils Coil 89 116 - -
Cma03g00674 498 MobiDBLite consensus disorder prediction 1 34 - -
Cma03g00674 498 MobiDBLite consensus disorder prediction 412 431 - -
Cma03g00674 498 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 495 IPR044961 -
Cma03g00674 498 Gene3D Tetratricopeptide repeat domain 49 269 IPR011990 GO:0005515
Cma03g00674 498 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00674 - - - csv:101220568 838.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00674 Cma-Chr3:5589638 Cma14g01882 Cma-Chr14:13320542 3.98E-100 dispersed
Cma13g00483 Cma-Chr13:5210422 Cma03g00674 Cma-Chr3:5589638 6.64E-94 transposed
Cma18g00514 Cma-Chr18:3110258 Cma03g00674 Cma-Chr3:5589638 4.65E-84 transposed
Cma03g00674 Cma-Chr3:5589638 Cma07g00415 Cma-Chr7:1794431 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00674 Cma_Chr03 FPKM 2.02004 1.995639 0.0 0.17483 7.003741 4.433092 6.196875 0.0 0.0 0.0