Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00675 ATGGCTAGATACGATAGGGCAATCACTGTCTTCTCCCCTGACGGTCATTTGTTTCAAGTCGAATACGCTCTCGAAGCTGTGCGGAAAGGTAACGCCGCCGTTGGTGTTCGTGGCACCGATACTATCGTCCTCGGTGTTGAGAAGAAGGCTGCGCCTAAGCTCCAAGACTCCAGATCTGTGAGGAAGATTGTGAATCTTGATAACCATATTGCACTAGCTTGTGCTGGGCTCAAGGCAGATGCACGTGTCTTGATAAATAGGGCTCGGATCGAGTGTCAAAGCCATCGGCTTACAGTTGAGGATCCAGTAACTGTTGAGTATATTACTCGTTACATTGCAGGTCTCCAACAGAAGTATACCCAAAGTGGTGGAGTGAGACCATTTGGCCTCTCAACCTTGATTATAGGTTTTGATCCATATACTGGCACACCCTCACTGTACCAGACAGATCCTTCTGGGACGTTTTCGGCTTGGAAAGCAAATGCAACTGGTAGAAACTCCAATTCGATAAGGGAATTTTTAGAGAAAAATTATAAGGAAACTTCTGGTCAGGAAACTGTGAAGCTTGCAATCCGTGCATTGCTTGAGGTTGTTGAGAGTGGTGGAAAGAACATAGAGGTCGCCGTGATGACAAAGGAGCATGGACTGCGACAATTGGAAGAAGCTGAAATTGATGCTCTCGTTGCAGAAATTGAAGCAGAAAAGGCAGCTGCTGAGGCTGCAAAAAAAGCTCCTCCCAAGGAAACATGA 750 46.53 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKAAPKLQDSRSVRKIVNLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPYTGTPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGKNIEVAVMTKEHGLRQLEEAEIDALVAEIEAEKAAAEAAKKAPPKET 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5594321 5597716 - CmaCh03G006750.1 Cma03g00675 290246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00675 249 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 248 - -
Cma03g00675 249 Pfam Proteasome subunit 27 210 IPR001353 GO:0005839|GO:0051603
Cma03g00675 249 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 246 IPR029055 -
Cma03g00675 249 ProSiteProfiles Proteasome alpha-type subunit profile. 19 228 IPR023332 -
Cma03g00675 249 Coils Coil 217 244 - -
Cma03g00675 249 CDD proteasome_alpha_type_7 4 210 - -
Cma03g00675 249 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Cma03g00675 249 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 248 - -
Cma03g00675 249 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
Cma03g00675 249 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Cma03g00675 249 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 234 IPR029055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00675 K02731 PSMA7; 20S proteasome subunit alpha 4 [EC:3.4.25.1] - csv:101221038 441.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00675 Cma16g01244 CCT
Cma03g00675 Cma16g01244 ECH
Cma03g00675 Cma07g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00675 Cma-Chr3:5594321 Cma18g00562 Cma-Chr18:3706139 7.03E-55 dispersed
Cma16g01244 Cma-Chr16:9405592 Cma03g00675 Cma-Chr3:5594321 2.38E-167 wgd
Cma03g00675 Cma-Chr3:5594321 Cma07g00416 Cma-Chr7:1800742 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1139 Blo04g00877 Blo16g00088 . . Bpe15g00479 Bpe13g00408 . . . . Cma03g00675 Cma07g00416 Car03g00620 Car07g00366 Sed14g1202 Cpe19g00867 Cpe10g00674 Bhi03g00844 Tan03g2096 Cmetu04g0205 . Hepe04g1605 . . Cla01g01990 Cam01g2088 Cec04g1745 Cco04g1810 Clacu01g2106 Cmu01g1982 Cre04g1659 Cone8ag0859 Cone12ag0822 . . Lsi01g00587 . . Cme08g00945 . . Bda11g01829 . . . . . . Cmo03g00699 Cmo07g00414 Cma16g01244 . . . . . . . . . . . . . . . . . . . Lsi07g01093 Csa06g03343 Chy02g00558 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002432 2 1 2 0 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00675 Cma_Chr03 FPKM 27.412069 29.129766 30.854101 34.806896 35.654442 40.123974 35.436676 28.906872 28.529366 28.650629