Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00677 ATGGGGGCGCGATTTTTTTGCTACTTTTTCGTCCCGGGAAAACCCGCCCCGTTCCTTTATGAAACTTTCATACCGCTCATTCGCAGTCAAATTTCGCCGGCAGTTTCCGCCGCCGTTGTTTTTCCGCCCACTTTTCCGCGACGGTTTCTGGTTTTCCAGACTTCGAACACCGCCCACAGATCTCGAACCACCGGAATCGCACCGCTAATCATGGGCTCCCTCGATAGCTTCGAAGCCGGAATCGTCACCGTCGACGTCAAAACCGCCAAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTCGAGGAGTTCAAAGAAGGGCACGTAGCGACGGAGAAGATCGTCAATATTCCGTATCAATTCAATTCTCCAGATGGTAGGGTGAAGAATGATCGGTTTCTGGAGGAGGTGTCCGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGATTCAAGCATTTGACAGATCTGGGCGGAGGGCATCTGGCTTGGCTGGAGAATGGATTTCCTGTGGCTAAGCCAAAAGTGAAGACAGCTGATCCAAAAACTGTTTCCGCCGCCGTTGTTCTTCCGCCGTCTTTTCTTCGACCGTCTCTGTTTTTTCCGACATCAAAAACCGCCCACGATTTCATCATGAGCTCCCTCGACAGTTCCAGCGCCGGAGTCGTCACCGTCAATGTCCTCACGGCCAAGAAACTGCTCGACTCCGGCTACGGTTTTCTCGACGTTAGGACCGTTGAGGAGTTCCAGAAAGGACACGTGGCAGCGGAGAAGATCGTCAATATTCCTTACTTCTTCTCGTCTCCAAATGGCAGGGTTAAGAATGACCGGTTTCTGGAGGAGGTGTCGGCGGTCTTTAAGAAAGACGACTACTTCATCGTGGGCTGCGGTGGTGGTGGTAGATCTCTGGTCGCCGCCGGAGAACTCGTGAATATCGAAACAAGCAAAGATTTGCAGGGAAGACCGAAGTGTTTGTGTAGCTTCCGCTTTGTCTTCCCTAGTTCTACCTTTCCTTCCGCAACGATGGTTCTCGAGGCAACGATGATCTGTATTGACAACTCCCAATGGATGCGGAATGGAGATTACAGTCCTTCAAGATTTCAAGCTCAAGAAGATGCCATCAATCTTATTTGTGGCGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGAGTTCTGACAATGGCGGGAAAAGGTGTTCGTGTGCTAGTCACTCCGACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGCCTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAAAAGTTACTGGAGGCGATTGGAAGGAAGTTGAAGAAGAACAATGTCACCCTCGATATTGTTGATTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTACTCTCTGATGTACTCATCAGTACTCCTATCTTTACTGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCGGCTGCTGCTGCTGGTGGCGTATCTGGTTTTGATTTTGGAGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCGGCAGAGGAGAATACAAAGCAAGAAAAAGAAGCAGAGCAGCCATCTGGCTCACAGGATGCAACTATGACTGAGCGTCCTGAACTTGCAACTTCTGATGCCGAAAACAAGACTGCTGATATAATGGATGATGATAATGCTCTGCTACAACAAGCCCTTGCTATGTCGATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCTGAAGTAACATCAGATGATCCTGATTTGGCACTTGCTCTTCAGTTATCGGTGCAGGAAGGGTCTAGTGATTCGACAAGTCAGACAGATATGAGCAAATTGTTGGCCGATCAGTCTTTTGTGTCTTCTATTCTAGCTTCACTTCCAGGCGTAGATCCAAATGACCCTTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGATAAGAAAAATGAAGACAAAGCATCAAAGGAAGATGAAAAATGA 2247 48.69 MGARFFCYFFVPGKPAPFLYETFIPLIRSQISPAVSAAVVFPPTFPRRFLVFQTSNTAHRSRTTGIAPLIMGSLDSFEAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVATEKIVNIPYQFNSPDGRVKNDRFLEEVSAVFKKDDRLVVGFKHLTDLGGGHLAWLENGFPVAKPKVKTADPKTVSAAVVLPPSFLRPSLFFPTSKTAHDFIMSSLDSSSAGVVTVNVLTAKKLLDSGYGFLDVRTVEEFQKGHVAAEKIVNIPYFFSSPNGRVKNDRFLEEVSAVFKKDDYFIVGCGGGGRSLVAAGELVNIETSKDLQGRPKCLCSFRFVFPSSTFPSATMVLEATMICIDNSQWMRNGDYSPSRFQAQEDAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEAIGRKLKKNNVTLDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKEAEQPSGSQDATMTERPELATSDAENKTADIMDDDNALLQQALAMSMDNPSATSDIRDIDMSEVTSDDPDLALALQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKNEDKASKEDEK 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5608658 5619570 - CmaCh03G006770.1 Cma03g00677 290248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00677 748 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 226 315 IPR036873 -
Cma03g00677 748 Pfam Ubiquitin interaction motif 669 684 IPR003903 -
Cma03g00677 748 Pfam Ubiquitin interaction motif 569 582 IPR003903 -
Cma03g00677 748 Pfam Ubiquitin interaction motif 637 650 IPR003903 -
Cma03g00677 748 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 669 688 IPR003903 -
Cma03g00677 748 ProSiteProfiles Rhodanese domain profile. 93 153 IPR001763 -
Cma03g00677 748 SUPERFAMILY vWA-like 349 520 IPR036465 -
Cma03g00677 748 CDD RHOD 234 315 - -
Cma03g00677 748 MobiDBLite consensus disorder prediction 710 748 - -
Cma03g00677 748 Gene3D - 213 322 IPR036873 -
Cma03g00677 748 Gene3D - 76 154 IPR036873 -
Cma03g00677 748 Gene3D - 565 656 - -
Cma03g00677 748 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 346 748 - -
Cma03g00677 748 ProSiteProfiles Rhodanese domain profile. 154 177 IPR001763 -
Cma03g00677 748 MobiDBLite consensus disorder prediction 585 607 - -
Cma03g00677 748 CDD VWA_26S_proteasome_subunit 346 533 - -
Cma03g00677 748 MobiDBLite consensus disorder prediction 733 748 - -
Cma03g00677 748 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 80 175 IPR036873 -
Cma03g00677 748 SMART VWA_4 347 520 IPR002035 -
Cma03g00677 748 MobiDBLite consensus disorder prediction 585 631 - -
Cma03g00677 748 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 567 586 IPR003903 -
Cma03g00677 748 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 346 748 - -
Cma03g00677 748 ProSiteProfiles Rhodanese domain profile. 244 313 IPR001763 -
Cma03g00677 748 CDD RHOD 88 173 - -
Cma03g00677 748 Gene3D von Willebrand factor, type A domain 348 531 IPR036465 -
Cma03g00677 748 SMART uim 637 656 IPR003903 -
Cma03g00677 748 SMART uim 567 586 IPR003903 -
Cma03g00677 748 SMART uim 669 688 IPR003903 -
Cma03g00677 748 Pfam von Willebrand factor type A domain 351 459 IPR002035 -
Cma03g00677 748 Coils Coil 577 606 - -
Cma03g00677 748 ProSiteProfiles VWFA domain profile. 350 534 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00677 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00645 Cma-Chr3:5492847 Cma03g00677 Cma-Chr3:5608658 1.02E-15 dispersed
Cma03g00677 Cma-Chr3:5608658 Cma06g00118 Cma-Chr6:619785 0 dispersed
Cma16g01241 Cma-Chr16:9376688 Cma03g00677 Cma-Chr3:5608658 0 wgd
Cma03g00677 Cma-Chr3:5608658 Cma07g00417 Cma-Chr7:1803391 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00677 Cma_Chr03 FPKM 42.656616 43.500526 40.589432 41.193268 30.783386 30.647524 26.532335 33.322254 35.728622 34.021313