Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00685 ATGGAGCACTGGAAAACGGGGGATTTCTCCTCTCAATCTATTGTAGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCGCTCTCTTTGTCCTCGAGTCGCCACCATAACAACCAGCTTCCTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCAATGGCAGTGAAAAAAACCCAAAAGGCAGATCGTGAAAAATTGAGAAGAGACAGACTGAACGAACATTTTCATGAGCTTGGAAACATATTGGATCCAGTTAGGCCCAAAAATGACAAGGCCACCATCCTAACAGACACCATCCAAACGCTGAAGGAGTTGACTGCCGAAGTCAATAGATTAAAGGCCGACTATGAAGCTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAACTTAGAGATGAGAAAGCTTCACTAAAATCAGAAATTGAAAATATAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCCGAGGTCATGGTGCCCCCATATTCCTACCCAGTTCCTGTTTCCGTTCCCCCAGGACCGATTCCCATGCACCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGTCCATCCTCCAAATGGTCAGCCCTCTGCCCAATATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAGGTCATCAGATCAGCACAGGCGCAGTAATGCAGGTAGCTGCGACGAATCGAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCCTCCTCTAGAAGTAAGAAAGGTAAGCAGTCTCAGAGGAAAGAAAAAAGTATTACAGATTGTAGTTCGTCGAGTCGGGTTTCTTCATCCAAAGTTCTTCAAGATAGCTCCTCTAACAGCATTGGCGACATCCCGAAACAGAACAACTGA 1008 45.54 MEHWKTGDFSSQSIVAADLVPSSSLQPQPLSLSSSRHHNNQLPESRLRTDAEVKDPMAVKKTQKADREKLRRDRLNEHFHELGNILDPVRPKNDKATILTDTIQTLKELTAEVNRLKADYEALSEESRELTQEKNELRDEKASLKSEIENINAQYQQRLRVMFPWATMDPSEVMVPPYSYPVPVSVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAVHPPNGQPSAQYASNSHISSKQDSRSRSSDQHRRSNAGSCDESNDVATDLELKMPGSSTQQDASSRSKKGKQSQRKEKSITDCSSSSRVSSSKVLQDSSSNSIGDIPKQNN 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5646124 5649405 + CmaCh03G006850.1 Cma03g00685 290256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00685 335 Gene3D - 57 162 IPR036638 GO:0046983
Cma03g00685 335 MobiDBLite consensus disorder prediction 228 246 - -
Cma03g00685 335 Coils Coil 99 154 - -
Cma03g00685 335 MobiDBLite consensus disorder prediction 20 53 - -
Cma03g00685 335 SMART finulus 65 115 IPR011598 GO:0046983
Cma03g00685 335 CDD bHLH_AtILR3_like 64 138 - -
Cma03g00685 335 PANTHER TRANSCRIPTION FACTOR BHLH11 32 334 - -
Cma03g00685 335 MobiDBLite consensus disorder prediction 226 335 - -
Cma03g00685 335 MobiDBLite consensus disorder prediction 247 263 - -
Cma03g00685 335 MobiDBLite consensus disorder prediction 292 306 - -
Cma03g00685 335 MobiDBLite consensus disorder prediction 307 335 - -
Cma03g00685 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Cma03g00685 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 129 IPR036638 GO:0046983
Cma03g00685 335 MobiDBLite consensus disorder prediction 277 291 - -
Cma03g00685 335 Pfam Helix-loop-helix DNA-binding domain 60 109 IPR011598 GO:0046983
Cma03g00685 335 PANTHER TRANSCRIPTION FACTOR BHLH121 32 334 IPR044579 GO:0003700|GO:0055072
Cma03g00685 335 MobiDBLite consensus disorder prediction 20 40 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00685 Cma07g00427 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00685 Cma-Chr3:5646124 Cma16g00846 Cma-Chr16:4970716 1.70E-22 dispersed
Cma02g00329 Cma-Chr2:1617043 Cma03g00685 Cma-Chr3:5646124 1.24E-63 wgd
Cma03g00685 Cma-Chr3:5646124 Cma07g00427 Cma-Chr7:1835142 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34630 PF00010 HLH 3.70E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00685 - - cmos:111453878 565.459