Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00688 ATGGACGGAGAAGACGGTGGCGGGAGGCTGGTTGTGAGGGGAAGAGCTGAGATTGACACTAGAGCGCCGTTCAAGTCCGTTAAGGAGGCAGTCATGTTGTTCGGCGAACGAGTTCTGGTCGGAGAAATTTATGGCAACAAAATTAAAGAAATGGCAGAATCCGGTCAGTCGCGGAGCAGAGTAGGAGCCTTAACGGCGGAGCTAAAAGGGACAAAGGAAAGGCTAGAGAAAGCCAAAGAAGAAAACGGGCTACTATCCTTCTGCCTCCAATCCCTCACAGACGAGCTCGACCGGACCAAACAAGAGCTCCATAAACTGAAAGCAACAGACCAACAAAAACCGCAGCTTTCACCGCCAACCACAATCCACCCCGACGTTGACGAAGATCTCAAATTCGTCGAGAATGAAAAGGAAGGCAGCAGCAATAATAACACACCCCAAGACAACAAGAGATGCGTGAAATTTGCAAGCCCTCCTGACTTGGACCGTGTCATCGTTTGTAAGGACAAATTGTTGGCCCATAAATCATCGCCCCCGGCTTCGGCTAAGACTCCCACAAGGTCGAAGAAGAAGAATTTGGTCCCTTTGGTTGGATGGCTTTTCGCTAAAAAGAAGGGATATTGA 624 49.36 MDGEDGGGRLVVRGRAEIDTRAPFKSVKEAVMLFGERVLVGEIYGNKIKEMAESGQSRSRVGALTAELKGTKERLEKAKEENGLLSFCLQSLTDELDRTKQELHKLKATDQQKPQLSPPTTIHPDVDEDLKFVENEKEGSSNNNTPQDNKRCVKFASPPDLDRVIVCKDKLLAHKSSPPASAKTPTRSKKKNLVPLVGWLFAKKKGY 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5687985 5689904 + CmaCh03G006880.1 Cma03g00688 290259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00688 207 Coils Coil 61 81 - -
Cma03g00688 207 Coils Coil 89 109 - -
Cma03g00688 207 MobiDBLite consensus disorder prediction 135 154 - -
Cma03g00688 207 MobiDBLite consensus disorder prediction 137 151 - -
Cma03g00688 207 PANTHER WEB FAMILY PLANT PROTEIN 1 206 - -
Cma03g00688 207 MobiDBLite consensus disorder prediction 106 125 - -
Cma03g00688 207 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 1 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00688 - - - cmax:111478002 414.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00688 Cma07g00430 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00688 Cma-Chr3:5687985 Cma04g01861 Cma-Chr4:9454824 5.46E-06 dispersed
Cma01g01970 Cma-Chr1:12704293 Cma03g00688 Cma-Chr3:5687985 7.22E-27 wgd
Cma03g00688 Cma-Chr3:5687985 Cma05g00303 Cma-Chr5:1311385 4.52E-09 wgd
Cma03g00688 Cma-Chr3:5687985 Cma07g00430 Cma-Chr7:1872332 8.34E-55 wgd
Cma03g00688 Cma-Chr3:5687985 Cma09g00106 Cma-Chr9:468990 1.40E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012941 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00688 Cma_Chr03 FPKM 6.657794 6.319885 1.111804 2.054878 5.123088 3.668695 3.978452 0.0 0.0 0.0