Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00691 ATGGCGATTAGTCATCAGCATCTCAAACTGGAAGACCCTTTTCTTCATAACTACAAGCCATCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCGTTTCTTTCGAGAGATCTCTGCCGGAACTGCACCAAATTGCTCTCGGATCGAATCCGCGCCCTCGACCCAGCTTCCCGTACCGACGAGAATTCAAGTTCTACACCACCAGTTGAAGTCATGCATGAGAGTAATGGGAATCAGAACGATGCTTGTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGAAGTTGGAAGGACGGCATAAATGAAGGGAATGAAGCTGATGGGGTACCTGAAACTTCTTCTAGCGTACCATCCACTAAAGTAGTTTCCATCAAGACCTCAGGGCCTCGAATGTCGTGGGCTGATATGACTCAGGAAGATGAACTAGAAGAAGAAGAAGAAGATGATGAGTATGAATCAGAAAAAAGAGTTGTCAGTGTTAATGAGTCCACAAGGAAATTAACAATATCAAAGGTTATTGAGAAGCCAAAGCTGTCTAGAGAGCAGAGAGAGCACATCAGGTTCATAAATGTTGGACGGAAGAAAGATTTTATTTGTCTGGAGAGGTTTAAAGGGAAATTAGTAAATATTCTTGAAGGACTTGAGCTTCATACAGAACGAACATTTTCAGCTCCCAAAAAGTGGATGAAGGGGAAGGGACGTGTGACTCTGCAGTTCGGGTGCTGTTACAATTATGCACCTGATAAAAATGGCAATCCTCCTGGAATTCTTCGAAGCGAAATTGTGGATCCAATACCTTCTCTTTTTAAGGTGATCATTAGAAGGTTGGTTAGGTGGCATGTGCTTCCTCCAACATGTGTTCCTAATAGTTGCATTGTGAACATCTACGACGAAGGGGACTGTATTCCTCCCCATATTGACAGCCATGATTTTGTCAGACCGTTTTGCACCGTGTCGTTCCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATTGTAGGACCAGGTGAATTTTCTGGGCCAATTGCAATCCCTCTACCCGTGGGGTCTGTTCTTGTGTTAAATGGAAATGGAGCTGATGTTGCTAAACATTGTGTACCTGCAGTCCCTACAAAGAGGATATCAATTACATTTAGAAGAATGGATGAGTCGAAAATACCAATCGAGTATGCTCCAGAACCGGATTTGCAGGGAATCCAACCATTGCCCTATGAAGCAAGTGAAAATAATGTACCAACGTCTCCTGTATCATCAGAAAGAGAAATAAGAAGGCAGTCATTTAGGAGGGGTAGTCATATGAGAACCAGGGGATCTGGAAACCGAACCGACACTCGATTTGATTCACGCAATCTAGGTAGAGGTCGACATAGCTCAGCAGATAGGAGGAGCAGAGAAAAAATCTAG 1440 43.26 MAISHQHLKLEDPFLHNYKPSELRIASEFLTTWLPFLSRDLCRNCTKLLSDRIRALDPASRTDENSSSTPPVEVMHESNGNQNDACDANSLGSWKDEAETNSLGSWKDGINEGNEADGVPETSSSVPSTKVVSIKTSGPRMSWADMTQEDELEEEEEDDEYESEKRVVSVNESTRKLTISKVIEKPKLSREQREHIRFINVGRKKDFICLERFKGKLVNILEGLELHTERTFSAPKKWMKGKGRVTLQFGCCYNYAPDKNGNPPGILRSEIVDPIPSLFKVIIRRLVRWHVLPPTCVPNSCIVNIYDEGDCIPPHIDSHDFVRPFCTVSFLSECNIVFGTNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDESKIPIEYAPEPDLQGIQPLPYEASENNVPTSPVSSEREIRRQSFRRGSHMRTRGSGNRTDTRFDSRNLGRGRHSSADRRSREKI 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5697859 5702336 - CmaCh03G006910.1 Cma03g00691 290262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00691 479 MobiDBLite consensus disorder prediction 60 108 - -
Cma03g00691 479 PANTHER RNA DEMETHYLASE ALKBH9B 5 228 - -
Cma03g00691 479 Pfam 2OG-Fe(II) oxygenase superfamily 268 391 IPR027450 -
Cma03g00691 479 MobiDBLite consensus disorder prediction 117 141 - -
Cma03g00691 479 PANTHER RNA DEMETHYLASE ALKBH9B 229 472 - -
Cma03g00691 479 MobiDBLite consensus disorder prediction 415 432 - -
Cma03g00691 479 MobiDBLite consensus disorder prediction 403 479 - -
Cma03g00691 479 Gene3D - 208 401 IPR037151 -
Cma03g00691 479 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 5 228 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cma03g00691 479 MobiDBLite consensus disorder prediction 448 479 - -
Cma03g00691 479 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 297 394 IPR005123 -
Cma03g00691 479 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 229 472 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cma03g00691 479 SUPERFAMILY Clavaminate synthase-like 230 393 - -
Cma03g00691 479 MobiDBLite consensus disorder prediction 58 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00691 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 829.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00691 Cma-Chr3:5697859 Cma04g00989 Cma-Chr4:5095834 1.33E-25 dispersed
Cma03g00691 Cma-Chr3:5697859 Cma07g00432 Cma-Chr7:1886274 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00691 Cma_Chr03 FPKM 7.586691 7.936744 11.329725 10.484005 4.557531 5.035784 4.886474 9.065851 8.076138 8.013547