Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00698 ATGTCGTCGACTGGGGAAACTGAAGTGAAAGTTCCGGCGGAGGATGCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGGCCGAGAAGCCGGTGGAGGAGAAGAAATCTAGGACTCCGAGGGAGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACCGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAGGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAACACCAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGACGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCAAAGAAAGCGGTTGCGTGA 615 50.57 MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKANAEKNTKQARTTRATAGKRKDEAASKTAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5722107 5723675 + CmaCh03G006980.1 Cma03g00698 290269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00698 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00698 204 PANTHER HISTONE H1 4 204 - -
Cma03g00698 204 SUPERFAMILY Winged helix DNA-binding domain 53 133 IPR036390 -
Cma03g00698 204 Pfam linker histone H1 and H5 family 55 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00698 204 MobiDBLite consensus disorder prediction 152 166 - -
Cma03g00698 204 CDD H15 53 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00698 204 SMART h15plus2 52 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00698 204 MobiDBLite consensus disorder prediction 169 204 - -
Cma03g00698 204 MobiDBLite consensus disorder prediction 21 51 - -
Cma03g00698 204 PANTHER HISTONE H1 4 204 - -
Cma03g00698 204 MobiDBLite consensus disorder prediction 1 58 - -
Cma03g00698 204 Gene3D - 50 137 IPR036388 -
Cma03g00698 204 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cma03g00698 204 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cma03g00698 204 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cma03g00698 204 PRINTS Histone H5 signature 177 194 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cma03g00698 204 MobiDBLite consensus disorder prediction 123 204 - -
Cma03g00698 204 MobiDBLite consensus disorder prediction 123 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00698 K11275 H1_5; histone H1/5 - csv:101205007 254.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01769 Cma-Chr2:9869295 Cma03g00698 Cma-Chr3:5722107 1.85E-23 dispersed
Cma03g00698 Cma-Chr3:5722107 Cma12g01131 Cma-Chr12:8918423 1.76E-17 dispersed
Cma03g00698 Cma-Chr3:5722107 Cma05g01213 Cma-Chr5:9348393 8.27E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00698 Cma_Chr03 FPKM 215.024048 236.883636 288.646973 289.385895 62.651997 61.953617 62.16283 459.40625 505.009827 430.4151