Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00702 ATGGAGCCTCCTCTGTTATTCTTGGCGCTGCTGCTCCTCTGGGGTGCTCTGTTTTCCTCCTCTGCCGACACTAGCCCCCGAAGTTTACCGGAGATTCAGGCATTGATGTCCTTTAAACTTAATTTACATGACCCTCTTGGTGCATTGACGGCTTGGGATTCTTCCACCCCATTGGCGCCCTGTGACTGGCGGGGTATTGTTTGTACCAATAATCGAGTCACTGAACTCCGTTTGCCTCGTCTTCAACTCTCTGGTCGATTGACCGATCAGTTGCCCAACTTGCCCATGTTGCGGAAGCTGAGTATCCGTTCCAATTTCTTCAATGGTACGATTCCGTCTTCTTTGTCCAAATGTCTGTTTCTGCGTTCCGTTTTCTTGCAGTATAATTCGTTTTCCGGTGGCATTCCGGCGGAGATTGGGAATATGAGTAATCTCCGTATTCTCAACGCGGCGGAGAATCACCTCTCCGGCGTCATCCCCGGCGACCTTCCGAGTAGCCTTAGGTATCTCGATCTTTCGTCGAACGCATTTTCCGGTCAGATTCCAAGGAGCATTGTGAACATGACGCAGCTTCAGGTTGTTAATCTCTCTTTCAACATGTTCGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTAAACATCTCTGGCTCGACCACAATGTTTTGGAAGGGACGTTGCCTTCGGCTCTTGCGAATTGTTTTTCGCTCGTTCATTTGAGCGTTGAAGGAAATGCACTCCAAGGCGTAATCCCAGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTTATTTCACTCTCGCATAATAGTCTCTCTGGCTCAGTTCCTTACTCCATGTTTTGCAATGTCTCGACGCATCCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGGGTTCACGGACATTGTCAAATCTCAGACAGCAACGTGTTTTAGTGCTCTACAGGTCCTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCTTCGTGGTTAACGGGCGTTTCCACTTTGACACTCTTGGATTTTTCCGTCAATCACTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCGGGACTGCAAGAGCTCAGATTAGCGAATAATTCGTTTCACGGCGCCATTCCGTCTGAAATCAAGAACTTCGCCTCGATTTCTGTCATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGCCGTTTTTGGGTCATATGAGAGGTTTGAAACAGTTGTCTCTCGGAGGAAATCGTTTTTCCGGCACTGTTCCGGCCAGTTTGGGAAATCTCTTGGCGCTTGAAATCTTGAATTTAGAGGACAACGGCTTGAACGGAACCATTCCGCTGGAGCTAATGGGGCTTGGGAATTTAACAGCAATGGAGCTCGGTGGGAACGAATTTTCCGGTGATGTTCCGACTGGCATTGGGAATCTCAGTCGTCTTGAGATTTTGAATCTCAGTGCCAACAGTCTTTCCGGGATGATTCCGTCCAGTCTTGGCAATCTCTTCAAATTAACGACTCTGGACTTGAGCAAACAGAATATTTCTGGGGAGTTGCCATTTGAGCTATCTGGTTTGCCTAATTTGCAGGTCATTGCATTACAAGAAAACAAGCTATCTGGGAATGTTCCTGAAGGGTTCAGTAGTTTAATGGGTTTGCGCTACTTGAATCTAAGCTCAAACAGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCACTTGTTTCTCTGTCATTATCAGACAATCACATTTCCGGGTCCATCCCTTCCGAGCTAGGTAACTGCTCTGATCTACAAATTTTGGAGGTCCATTCAAATGCTCTTTCAGGCCATATTCCGGCCGATCTGTCTCGTTTATCTCATCTGCTAGAGCTGGACTTGGGCAGTAATAAATTGACCGGTGAAATCCCAGAGGCGATCTCGAGTTGCTCGTCTTTAGAATCTCTCCGTCTGAACTCGAATCATCTTTCGGGTAGCATACCGGAGTCGTTGTCGGAGCTCTCAAACTTAACCTCGCTTGACCTCTCATCCAACAATTTAAGTGGTGTAATCCCTGCTAATCTTAGCTCCATTGCCGGATTGACGAGCTTAAACGTATCGAGTAATGATCTAGAAGGCGAAATTCCACCCTCTTTAGGCTCTAGATTCAACTGTTCATCTGTGTTTGCTAACAATTCTGATTTATGTGGGAAACCATTGGCTCGGAATTGTAAGGATACAGAGAAAAAGGATAGAATGAAGAGATTGATACTCTTCATTGTAGTGGCCGCCAGTGGAGCTTGCCTGTTGACTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGAGATGGCGGAAGAGGCTCAAAGAGAAGGCGTCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCGGCTAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTAATGTTCAACAACAAGATTACCTTGGCGGAAACAATCGAGGCAACAAGGCAATTCGATGAAGAAAATGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAGGCTTGCTACAATGATGGCATGGTGCTCTCAATCCGCCGCCTCTCAAATGGATCATTGGACGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTCACTGTTCTTCGTGGCTACTATGCTGGCCCACCTGATATGCGGCTGTTAGTGTATGACTACATGCCTAATGGAAACCTTGCTACTCTCCTTCAGGAAGCATCTCACCAAGATGGTCATGTTCTGAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGATTAGCCTTTCTTCATTCATCATCCATTATCCATGGAGATGTTAAGCCACAAAGTGTTCTATTCGACGCCGATTTCGAAGCTCATTTGTCCGATTTCGGGCTCGATCGATTAACTCTCACGGCCTCTGCCGAAGCATCCACATCTACCTTAGTAGGCACATTGGGCTACATTGCTCCGGAAGCAGTGTTGACAGGGGAGGCCACCAAGGAATCTGATGTCTACAGCTTCGGCATTGTGTTGCTCGAGATTTTAACAGGGAAGAAACCAGTGATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTAAAAAAGCAATTGCAGAGAGGCCAAATTACTGAGCTTTTAGAACCAGGATTGCTTGAGCTGGATCCAGAGTCATCAGAATGGGAGGAGTTCTTACTAGGTGTAAAAGTTGGATTGCTTTGCACTGCACCCGATCCCCGTGATCGGCCGACCATGTCGGATATCGTTTTCATGCTCGAAGGTTGTCGAGTCGGACCCGATATCCCGTCCTCCGCCGATCCCACCTCCCAACTCTCGCCACCGAACCCATAA 3408 47.39 MEPPLLFLALLLLWGALFSSSADTSPRSLPEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGIVCTNNRVTELRLPRLQLSGRLTDQLPNLPMLRKLSIRSNFFNGTIPSSLSKCLFLRSVFLQYNSFSGGIPAEIGNMSNLRILNAAENHLSGVIPGDLPSSLRYLDLSSNAFSGQIPRSIVNMTQLQVVNLSFNMFGGEIPASFGELQELKHLWLDHNVLEGTLPSALANCFSLVHLSVEGNALQGVIPAAIGALPNLQVISLSHNSLSGSVPYSMFCNVSTHPPSLRIVQLGFNGFTDIVKSQTATCFSALQVLDIQHNQIRGEFPSWLTGVSTLTLLDFSVNHFSGQIPPGIGNLSGLQELRLANNSFHGAIPSEIKNFASISVIDFEGNRLTGEIPPFLGHMRGLKQLSLGGNRFSGTVPASLGNLLALEILNLEDNGLNGTIPLELMGLGNLTAMELGGNEFSGDVPTGIGNLSRLEILNLSANSLSGMIPSSLGNLFKLTTLDLSKQNISGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLMGLRYLNLSSNRFSGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLQILEVHSNALSGHIPADLSRLSHLLELDLGSNKLTGEIPEAISSCSSLESLRLNSNHLSGSIPESLSELSNLTSLDLSSNNLSGVIPANLSSIAGLTSLNVSSNDLEGEIPPSLGSRFNCSSVFANNSDLCGKPLARNCKDTEKKDRMKRLILFIVVAASGACLLTLCCCFYIFSLLRWRKRLKEKASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTLTASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQLSPPNP 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5732636 5736043 - CmaCh03G007020.1 Cma03g00702 290273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00702 1135 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cma03g00702 1135 SUPERFAMILY L domain-like 460 719 - -
Cma03g00702 1135 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 5 1129 - -
Cma03g00702 1135 Gene3D Phosphorylase Kinase; domain 1 813 915 - -
Cma03g00702 1135 MobiDBLite consensus disorder prediction 798 812 - -
Cma03g00702 1135 Pfam Leucine rich repeat 528 567 IPR001611 GO:0005515
Cma03g00702 1135 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Cma03g00702 1135 SMART LRR_sd22_2 578 601 - -
Cma03g00702 1135 SMART LRR_sd22_2 314 340 - -
Cma03g00702 1135 SMART LRR_sd22_2 674 703 - -
Cma03g00702 1135 SMART LRR_sd22_2 260 287 - -
Cma03g00702 1135 SMART LRR_sd22_2 626 655 - -
Cma03g00702 1135 ProSiteProfiles Protein kinase domain profile. 840 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00702 1135 Gene3D Ribonuclease Inhibitor 306 388 IPR032675 -
Cma03g00702 1135 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515
Cma03g00702 1135 SUPERFAMILY L domain-like 28 303 - -
Cma03g00702 1135 MobiDBLite consensus disorder prediction 793 820 - -
Cma03g00702 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1121 IPR011009 -
Cma03g00702 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1129 - -
Cma03g00702 1135 SMART LRR_typ_2 410 434 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 578 602 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 260 284 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 674 698 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 482 505 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 94 118 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 142 165 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 212 235 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 362 385 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 530 553 IPR003591 -
Cma03g00702 1135 SMART LRR_typ_2 626 650 IPR003591 -
Cma03g00702 1135 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Cma03g00702 1135 Gene3D Ribonuclease Inhibitor 389 457 IPR032675 -
Cma03g00702 1135 Pfam Protein kinase domain 850 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00702 1135 Gene3D Ribonuclease Inhibitor 161 303 IPR032675 -
Cma03g00702 1135 Gene3D Ribonuclease Inhibitor 458 748 IPR032675 -
Cma03g00702 1135 Gene3D Transferase(Phosphotransferase) domain 1 916 1119 - -
Cma03g00702 1135 Pfam Leucine Rich repeat 627 646 IPR001611 GO:0005515
Cma03g00702 1135 SUPERFAMILY L domain-like 281 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00702 Cma-Chr3:5732636 Cma17g00119 Cma-Chr17:598950 2.32E-169 dispersed
Cma04g00125 Cma-Chr4:592508 Cma03g00702 Cma-Chr3:5732636 4.18E-17 dispersed
Cma06g00213 Cma-Chr6:1087094 Cma03g00702 Cma-Chr3:5732636 4.05E-57 dispersed
Cma07g00176 Cma-Chr7:850799 Cma03g00702 Cma-Chr3:5732636 1.73E-08 dispersed
Cma14g00042 Cma-Chr14:179836 Cma03g00702 Cma-Chr3:5732636 2.92E-57 dispersed
Cma15g00170 Cma-Chr15:777070 Cma03g00702 Cma-Chr3:5732636 1.58E-06 dispersed
Cma11g00778 Cma-Chr11:3784085 Cma03g00702 Cma-Chr3:5732636 5.09E-87 transposed
Cma16g00645 Cma-Chr16:3354250 Cma03g00702 Cma-Chr3:5732636 2.63E-07 wgd
Cma03g00702 Cma-Chr3:5732636 Cma07g00441 Cma-Chr7:1934435 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68421 PF00069 Pkinase 8.40E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00702 - - cmax:111478744 2148.63