Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00704 ATGGAGGCTGCGTTGAAGATGGGTCTCATCAACAAACCCAGCCCCAAACTCCATTTGGATGAGCTTCGGTCTGCAAACCCGCAAAGCTCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTTTTCAACTTTTCAAATGAAGAAGAAGACGAGGAGGAGGAGGAGGCAGAGGGTGAAGAGAAAAACAACCATTCCTCTGTTTCTGCTCCCTTGCAACTTCAACAACACCGTGAGAGCGACGAAAATTCCAACCACAGCTCCACCAATTCCTCTGGAGATGTCTTTTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTGTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGTACCACTGAACTGCTCTGTTTTTTTGACAGAGAAACCCAATAGTTACCAAAAGGAACCAACCCACCATGCTCCCATCCTTCCGAATTTTGAATCTAATCTCAACACCCCATTTCCCTCAAAGCCAAGAAGCAAGCGAGCAAAAATCTCCGGCCGAGTCTGGTCATTAACGAATTCAATTTCTTCTCCATCGTTATACCCACCACAGGCGAAGAAACCAAAGAAAAACTCAGCAGAGGAGGGTTCCGGCAGGGGGCAGGCGCCACGGCGGTGTAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCTGGTCCGCTGGGGTCCAAGACTCTATGTAACGCGTGCGGTGTACGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTCTCGAGCGAGCTTCATTCAAACCACCACCGGAAAGTACTGGAGATGCGACAGAAAAAAGAAACGGAGACGACCCACTCCGGTCCAGACCCAACCCCGTAG 885 50.62 MEAALKMGLINKPSPKLHLDELRSANPQSSASPSSDYIFVDQLFNFSNEEEDEEEEEAEGEEKNNHSSVSAPLQLQQHRESDENSNHSSTNSSGDVFWSVSSRDFEDLEWLSHLVADSTQEEYSAVPLNCSVFLTEKPNSYQKEPTHHAPILPNFESNLNTPFPSKPRSKRAKISGRVWSLTNSISSPSLYPPQAKKPKKNSAEEGSGRGQAPRRCSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRQKKETETTHSGPDPTP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5744191 5745075 - CmaCh03G007040.1 Cma03g00704 290275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00704 294 CDD ZnF_GATA 215 263 IPR000679 GO:0006355|GO:0043565
Cma03g00704 294 MobiDBLite consensus disorder prediction 65 79 - -
Cma03g00704 294 MobiDBLite consensus disorder prediction 266 287 - -
Cma03g00704 294 Gene3D - 207 287 IPR013088 GO:0006355|GO:0008270
Cma03g00704 294 Coils Coil 44 64 - -
Cma03g00704 294 PANTHER GATA TRANSCRIPTION FACTOR 30 184 - -
Cma03g00704 294 PANTHER GATA TRANSCRIPTION FACTOR 186 286 - -
Cma03g00704 294 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355|GO:0043565
Cma03g00704 294 PIRSF Txn_fac_GATA_plant 20 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma03g00704 294 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Cma03g00704 294 MobiDBLite consensus disorder prediction 23 42 - -
Cma03g00704 294 MobiDBLite consensus disorder prediction 144 218 - -
Cma03g00704 294 MobiDBLite consensus disorder prediction 176 191 - -
Cma03g00704 294 MobiDBLite consensus disorder prediction 1 96 - -
Cma03g00704 294 MobiDBLite consensus disorder prediction 265 294 - -
Cma03g00704 294 PANTHER GATA TRANSCRIPTION FACTOR 30 184 - -
Cma03g00704 294 PANTHER GATA TRANSCRIPTION FACTOR 186 286 - -
Cma03g00704 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 273 - -
Cma03g00704 294 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Cma03g00704 294 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
Cma03g00704 294 MobiDBLite consensus disorder prediction 46 60 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00704 Cma20g00811 CCT
Cma03g00704 Cma20g00811 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00704 Cma-Chr3:5744191 Cma09g00633 Cma-Chr9:2992308 2.60E-39 dispersed
Cma16g00644 Cma-Chr16:3349745 Cma03g00704 Cma-Chr3:5744191 4.29E-63 wgd
Cma02g00364 Cma-Chr2:1797272 Cma03g00704 Cma-Chr3:5744191 5.13E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34635 PF00320 GATA 1.40E-16 CL0167 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00704 - K21630 bhj:120072849 440.269