Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00708 ATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGACCACCAAGACCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACAACACCACCACCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGATTCCTTACTCCGCCCCTCTACCCGTTCGAACCTCCGATGAATCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGGGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGCCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAGGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTGTTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCGGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCACCGGCGCCACTGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTGCTCGATCCCTCCTCCTTGTATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 951 52.89 MSGFFSLGGGGREDHQDHQQNNDTNPETLFWYKGNVELWQQQQHHHHPQQEQPLFQTQSRIPYSAPLPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDCAHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5754845 5756263 + CmaCh03G007080.1 Cma03g00708 290279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00708 316 Pfam Domain of unknown function (DUF702) 93 240 - -
Cma03g00708 316 MobiDBLite consensus disorder prediction 241 269 - -
Cma03g00708 316 MobiDBLite consensus disorder prediction 152 172 - -
Cma03g00708 316 MobiDBLite consensus disorder prediction 1 27 - -
Cma03g00708 316 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 192 239 IPR006511 -
Cma03g00708 316 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 95 137 IPR006510 -
Cma03g00708 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 312 IPR007818 GO:0003700|GO:0006355
Cma03g00708 316 PANTHER PROTEIN SHORT INTERNODES 1 312 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00708 Cma16g00640 CCT
Cma03g00708 Cma16g00640 ECH
Cma03g00708 Cma07g00452 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00708 Cma-Chr3:5754845 Cma04g00769 Cma-Chr4:3906567 2.00E-70 dispersed
Cma01g01939 Cma-Chr1:12590607 Cma03g00708 Cma-Chr3:5754845 7.42E-62 wgd
Cma12g00430 Cma-Chr12:2242402 Cma03g00708 Cma-Chr3:5754845 3.42E-73 wgd
Cma16g00640 Cma-Chr16:3315182 Cma03g00708 Cma-Chr3:5754845 8.35E-62 wgd
Cma03g00708 Cma-Chr3:5754845 Cma05g00281 Cma-Chr5:1203604 1.68E-85 wgd
Cma03g00708 Cma-Chr3:5754845 Cma07g00452 Cma-Chr7:1973447 2.33E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34636 PF05142 DUF702 9.50E-66 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00708 - - bhj:120072889 486.108