Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00718 ATGCCATCAGAACTCGATTCAGTCGAAAGCCCTAGAAAATGGCGCTTCACATGGGAAGCGCAATCCCATATACCAACCCTACGTTTATTGCTCTTCGATTCCTATACCAATCCTTCTCTTCAATGTCAGAATCTCAAGGTTCATCTCAATCTCCAGCAGTCCGTAGTTTGTGTGGCTTGGTTACAAGACGTCGAAATGTCCATTCGAGTTCCTATGCCTCCGGTTTTGGTTGACGCTGAGTCGCCTCTGAGTTTTAGAGCTTTCGAAAACCATATTGAGGTCAAGCTTGTCTTGCTTCTTCCGGTTGATCACCCAATCATTCTTAACTTCGACAATGTGCTGGACTTCTCCGAAAAGCGAGGACATAACAACTCCAAGGCGTTGAAGCCACTTTCAATGGATTATGATCAAAGCAGTTTATCACGCAGTGGTGGCGTCCACTTTTATTGCAGAAATTGTTCTTTCAGGCTGAGTGAATCCCCTCTCAGAAATTTTGTTGAAATGCCATCAGTCAACTGGCGAGAGGTGGCTGATAACTGGTTTGGGACTTGCTGCTGCTCCTTCGGGGGGGTAAGCGAGAAGCTGGTTACTAGGTACACAAATTCCTATAGATGTGCAAAGGGTGTCTGCCTACTCACTTTAACGACTATTACTCTTTCCAAGGATGACCTTATTGGACATGCGTTCCCAGACTATGATGGGACCCGAGAACTCAAGGAAGAATCAGATTTCACTGATGGCAATTGGTTAACTGAAGCTAAGCAAGAATCACAATGTAATCATACATCTACAGGGGAGGTAAAATCTAAGCAGTTCAATTATAAGAACCTTGTTGCAAAGACGGAGGGTAATGCTTCTGTGAAGGGAAGTGATGAAGTTGATTCACCTCTTGTGACTTCAATTCCTGACTTACATCAACATGGAGAAAGTAATGTACTTCATGATCTTGATAGAGATTGCATGCATCACACATGTGGCACATATGAGCTAGACCCAAAGCCTCTTAATACTGTAGATGTTTCGGACGATCAGATATCCTTTCTTAATGGTTTTCTTGGAAATATCTTTATGGCTAGACTGTCAAATCTTTCAGCAGATTTTGAATGGGCCGAGTTCTTTTGCCCCCAGTGTTCAACTCTGATTGGGGCTTACCCTTGCAGAAATGGCTGTGGGCCTACAGATGGTGGAGTTCGACTCTTTAAATGTTATGTCTCAACATGTTTATCAACTGAATCAGAAAATTTGTTCAGGGAGTACACGTTGGAAAAAATGTTTGCATCTCAGCTACTGGAAAGTGCAAATGAAGAATCATCATTTCGTACCGTGGTTAAGGAGTTGAAAACCAAGTCTACCATGCTGCACATTGTTCTCATCAATTCAAATTCTTGGTCGTGTAGTGGTTATTGTTTGGGTATGGAGGACACTGCAGAAGTTGTTCCAAAGGTGGATTTAAATCCAATCATCAAGGTGCTGTTCTCAGATTGCAACAAAAGTGCGGAATCTCACCTAAGGAAACTTGAAGAGTGGGTGACAAAAGATATAGCAGAAGAAGTTTTTATGTTAGCCCATCAAATAGAGGAATTAAATGAAATCCTAGTTTCAAGAAATGATACACTTCCATCTTCATGTTCTTCCCTTGATGGTTTGACTTTGACATCTATTCTGAGATGTAACTCGATAAAGATGAGTAGCAACGTTGAAGAACTCATTGTATACCGTGTCTCTGCTACTTTGAGGAGGCACCAGCCGAGCTTTAAGAGAAATAATTGCGAGGAAAATGCCCGCGTTTCTGGTGTAATGATCGGACAGTTCCCATGGTCGCAGTTCTCAAATTCCAGTCCTTTGATTCAGTGGAGGGCAACAAAACGGAGGTATTCACTTGAAGGTTTCAGTCATGATATCTCAGCTGCTGAGCTTACAAAATTTAGTTTGCAGCCTGCAGGACATGTTCAAAAACGTTGA 1962 42.3 MPSELDSVESPRKWRFTWEAQSHIPTLRLLLFDSYTNPSLQCQNLKVHLNLQQSVVCVAWLQDVEMSIRVPMPPVLVDAESPLSFRAFENHIEVKLVLLLPVDHPIILNFDNVLDFSEKRGHNNSKALKPLSMDYDQSSLSRSGGVHFYCRNCSFRLSESPLRNFVEMPSVNWREVADNWFGTCCCSFGGVSEKLVTRYTNSYRCAKGVCLLTLTTITLSKDDLIGHAFPDYDGTRELKEESDFTDGNWLTEAKQESQCNHTSTGEVKSKQFNYKNLVAKTEGNASVKGSDEVDSPLVTSIPDLHQHGESNVLHDLDRDCMHHTCGTYELDPKPLNTVDVSDDQISFLNGFLGNIFMARLSNLSADFEWAEFFCPQCSTLIGAYPCRNGCGPTDGGVRLFKCYVSTCLSTESENLFREYTLEKMFASQLLESANEESSFRTVVKELKTKSTMLHIVLINSNSWSCSGYCLGMEDTAEVVPKVDLNPIIKVLFSDCNKSAESHLRKLEEWVTKDIAEEVFMLAHQIEELNEILVSRNDTLPSSCSSLDGLTLTSILRCNSIKMSSNVEELIVYRVSATLRRHQPSFKRNNCEENARVSGVMIGQFPWSQFSNSSPLIQWRATKRRYSLEGFSHDISAAELTKFSLQPAGHVQKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5801115 5805309 - CmaCh03G007180.1 Cma03g00718 290289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00718 653 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 15 551 IPR019193 -
Cma03g00718 653 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 122 544 IPR019193 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00718 Cma16g00631 CCT
Cma03g00718 Cma16g00631 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00718 - - csv:101204887 979.548