Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00722 ATGGACCCGAACACCGTGAAGTCGACCCTTTCAAATTTAGCATTTGGAAATGTAATGGCCGCTGCTGCTCGTGATTATCAAAAGGAATTGCTTGCTCAAGAGAAATCTCAGACATCAAATTCTAACAACGAGGAAGTTGACCTTGACGAGTTGATGGATGATCCAGAGCTGGAAAAATTGCATGCAGATAGAATTGCAGCTCTCAAGCAGAAGGAAGCTGAGAAGAGGGAAGCAATGAAGAGACAAGGGCATGGGGAATACAGAGAAATAACTGAAGGAGACTTTTTGGGAGAAGTCACCGGGAGTGAAAAAGTGATTTGCCACTTCTATCATCATGAATTCTACCGCTGCAAGATTATGGATAAGCATTTGAAGACTCTTGCACCAAAACATTTAGACACAAAATTCATCAAGCTAGATGCAGAGAATGCACCCTTCTTTGTTACCAAACTTGGAATCAAGACTTTGCCTTGTGTTATTCTCTTCAGGAAAGGCATTGCTACAGATAGGCTTGTTGGGTTCCAAGATTTAGGTGGAAAAGATGATTTCAGTACAAAGACACTAGAAATTTTATTGACAAAGAAAGGTTTCATCAGTGAGAAAAAGGATGAAGAGGAAGACGAGTACGACGAAAGTAGGCGAAAGGCGGTGAGATCTTCTACCAACGTCGATTCCGACTCAGATTAG 687 41.63 MDPNTVKSTLSNLAFGNVMAAAARDYQKELLAQEKSQTSNSNNEEVDLDELMDDPELEKLHADRIAALKQKEAEKREAMKRQGHGEYREITEGDFLGEVTGSEKVICHFYHHEFYRCKIMDKHLKTLAPKHLDTKFIKLDAENAPFFVTKLGIKTLPCVILFRKGIATDRLVGFQDLGGKDDFSTKTLEILLTKKGFISEKKDEEEDEYDESRRKAVRSSTNVDSDSD 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5817434 5819809 - CmaCh03G007220.1 Cma03g00722 290293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00722 228 Coils Coil 57 77 - -
Cma03g00722 228 Gene3D Glutaredoxin 77 211 - -
Cma03g00722 228 SUPERFAMILY Thioredoxin-like 39 199 IPR036249 -
Cma03g00722 228 Pfam Thioredoxin 89 175 IPR013766 -
Cma03g00722 228 MobiDBLite consensus disorder prediction 203 221 - -
Cma03g00722 228 PANTHER BNAANNG14790D PROTEIN 1 228 - -
Cma03g00722 228 MobiDBLite consensus disorder prediction 203 228 - -
Cma03g00722 228 PANTHER THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 1 228 - -
Cma03g00722 228 CDD Phd_like_TxnDC9 82 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00722 - - - bhj:120073873 405.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00722 Cma-Chr3:5817434 Cma20g00627 Cma-Chr20:2924896 5.86E-38 dispersed
Cma03g00722 Cma-Chr3:5817434 Cma08g00692 Cma-Chr8:4245135 2.04E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1028 . . . Bda10g00145 . . . Bma15g00991 . . Cma03g00722 . Car03g00662 . Sed14g1154 . Cpe10g00634 Bhi03g00923 Tan03g2020 Cmetu11g0188 . Hepe04g1548 . . . . . . . . . . . . . . . . . . Blo06g00141 . . Bpe10g00126 . . . . Cmo03g00749 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004628 2 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 5 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00722 Cma_Chr03 FPKM 18.983501 23.512959 23.793661 25.64645 32.165302 28.903257 32.127644 39.751862 41.235256 39.897766