Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00726 ATGTTGTGGAAGGAGGAGCTTGTGCTCTTAGCTCAAAACTATTTTGACACTACGACAGTGGCGGCAGTTCTTTCCGTAGGTATTTTAGTGTTGGTTTCGAAAGTTTGCTGGAGACAGAGGAGCAAGAATGTTGGAGGAATTCCTGGTCACTTGGGGTTACCCTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGCACCAGAGGGTGTTACCAATTTGTCAGGCTCCGCCGGCATGGTAGGTGGTTCAGGACAAGGCTATTTGGAAAAATCCATGTGTTTGTTCCAAGTGCAGAAGGTGCAAAGGCAATTCTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGCGATGCTGTTGGAGAGAAGAGTTTACTATGCGTTTCCCATGAGGACCACAGAAGGATTAGGCGTCTTCTGGCTGATCCTTTCTCTATGACTTCTCTGTCTAAGTTTGTCAAACAATTTGACGACATGCTCTCCAAAAGGCTACAGAAACTAGTAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTCAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAAAAAGACTGTACAGCAGTCACTGACGCCATGCTATCTTTCCCATTCATGATTCCAGGAACTAGGTACTACAAAGGCATCAAGGCACGAAACCGACTAATGGAAAGGTTAGGAGAAATAATATCCAGGCGAAGGAGGGGAGAGGAGTCACCAGAAGACTTCCTGCAGTCAATGTTGCAGAGAGATTCGTATCCTCCGGATCAGAAGTTAGATGACTCAGAGATAATGGATAACCTTTTGACACTGATAATTGCAAGCCAAACTACCACAGCTGCTGCTATGATGTGGAGTGTCAAGTTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTGCGGGAGGAACAGTTGTCAATTCTACGAAAGAAGGAAGATGGAGAACTACTTACTCTTGAAGATCTTAATAAAATGTCCTTTGGTTCAAAGGTCGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGGGATTGCAGATTAGAAGGTTTTGAAATAAAGAAAGGATGGCATGTGAACATCGATGCAACATGCATTCATTATGACCCAGATTTGTACAAGGACCCCATGCAATTCAACCCTTCGAGATTTGATGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGACCCAGGACCTGTCTCGGAATCAACATGGCCAAATTAACAATGTTGGTCTTTTTGCACAGGATGACTGGAGGGTACAGGTGGACGGTTGATGATCCAGATCCTTGCCTCGAAAAGAAGGCACATATCCCTAGGCTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTGTACGATGGGACATAA 1464 43.99 MLWKEELVLLAQNYFDTTTVAAVLSVGILVLVSKVCWRQRSKNVGGIPGHLGLPFVGETFSFLSANNSTRGCYQFVRLRRHGRWFRTRLFGKIHVFVPSAEGAKAILANDFVQFNKGYVKSMGDAVGEKSLLCVSHEDHRRIRRLLADPFSMTSLSKFVKQFDDMLSKRLQKLVKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVTDAMLSFPFMIPGTRYYKGIKARNRLMERLGEIISRRRRGEESPEDFLQSMLQRDSYPPDQKLDDSEIMDNLLTLIIASQTTTAAAMMWSVKFLDENREAQERLREEQLSILRKKEDGELLTLEDLNKMSFGSKVVKETLRMSNVLLWFPRVALGDCRLEGFEIKKGWHVNIDATCIHYDPDLYKDPMQFNPSRFDEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYRWTVDDPDPCLEKKAHIPRLRSGCPITLKTLYDGT 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5830083 5832977 + CmaCh03G007260.1 Cma03g00726 290297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00726 487 PANTHER CYTOCHROME P450 26 19 483 - -
Cma03g00726 487 Gene3D Cytochrome P450 37 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 Pfam Cytochrome P450 49 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PANTHER CYTOCHROME P450 FAMILY PROTEIN 19 483 - -
Cma03g00726 487 SUPERFAMILY Cytochrome P450 37 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00726 487 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Cma03g00726 487 Coils Coil 314 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00726 - - - cmax:111478438 951.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00726 Cma-Chr3:5830083 Cma08g00978 Cma-Chr8:6108296 9.79E-69 dispersed
Cma01g01001 Cma-Chr1:7251686 Cma03g00726 Cma-Chr3:5830083 1.32E-97 transposed
Cma12g00452 Cma-Chr12:2380444 Cma03g00726 Cma-Chr3:5830083 1.31E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00726 Cma_Chr03 FPKM 11.720061 12.838194 0.345303 0.350145 0.787517 1.098174 1.002633 0.0 0.0 0.0