Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00729 ATGGAAGTAGGTCAAGTTCTTCACATGAATGGAGGAGTTGGAGATCTTAGCTATGCTACCAATTCCCGTCTTCAGTCGAAGGTGATATCAATGACGATGCCAATTGCTGAGGAAGCCATTGTCAACCTCTACTGCTCCACTTTTCCAACCACTTTAACCATCGCGGATTTGGGCTGTTCTTCTGGACCCAACGCATTGATGCCAGTTTCCCAACTCATTGAGGCAGTCGAAAAGGCTCGCCGGAAGCTCCGCAAGGAATCAATCGAATATCAAGTTTTGTTAAACGACTTACCCGGAAATGACTTCAATACCATCTTCAAATCCATGCCCAACTTCCTCGAAGATTTGAAAATTAAGATTGGCCCTGATCTTGGGCCTTGTCTCGTTACTGGGGTGCCTGGCTCTTTCTATGGCAGGCTTTTCCCTACCCATAGCGTCCACTTTATTCATTCTTCCTATAGCCTTCATTGGCTATCGAAGGTTCCTGAAGGGTTGGAGGAGAATAAAAGAAATATTTTTATGGCTGAGACGAGCCCAGAGAGTGTGCTGAAAGCTTATTATGACCAATTCCAAAAGGACTTCTCCTTGTTTCTCAAGTGTCGTGCGCAAGAATTGGTGGGTGGGGGTTGCATGATTTTTACACTCCCGGGAAGGAAAAGCCAAAACCCAGCTAGTAGGGAGTGTTCTTACACTTGGGAGCTTTTGGCTATGGCGCTTAACGACATGGTCTCCAAGGGAAAGATAGAAGCGGAGAAATTGGAGAGCTTCAACATACCCAAATACAAGCCTACACCAACAGAAATAGAGATTGAGGTTGCAAAAGAAGGATCCTTTGTGGTGGATGGCATTAGGGTTTGGGACGTTTCCAGCAATCAATTCAGCAACAACGCATTAGACGGTTTAAAGAGTAGCAGCGACAACGTAGCAAAGGGCATAAGGGCTATAGCTGAACCAATTCTTGTAAGCCATTTTGGAGACGAAGTTATGGATGAATTGTTCATCAAATACAGTGAGATCATAGCAGACCGTAAGGTAAAAGAGAAAACTAATCTTGTCAATGTCACTGTTTCCCTCACTAAACCAAAGTGA 1089 44.54 MEVGQVLHMNGGVGDLSYATNSRLQSKVISMTMPIAEEAIVNLYCSTFPTTLTIADLGCSSGPNALMPVSQLIEAVEKARRKLRKESIEYQVLLNDLPGNDFNTIFKSMPNFLEDLKIKIGPDLGPCLVTGVPGSFYGRLFPTHSVHFIHSSYSLHWLSKVPEGLEENKRNIFMAETSPESVLKAYYDQFQKDFSLFLKCRAQELVGGGCMIFTLPGRKSQNPASRECSYTWELLAMALNDMVSKGKIEAEKLESFNIPKYKPTPTEIEIEVAKEGSFVVDGIRVWDVSSNQFSNNALDGLKSSSDNVAKGIRAIAEPILVSHFGDEVMDELFIKYSEIIADRKVKEKTNLVNVTVSLTKPK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5842990 5845158 - CmaCh03G007290.1 Cma03g00729 290300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00729 362 Gene3D Vaccinia Virus protein VP39 21 348 IPR029063 -
Cma03g00729 362 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 360 IPR005299 GO:0008168
Cma03g00729 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 360 IPR029063 -
Cma03g00729 362 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 360 - -
Cma03g00729 362 Coils Coil 69 96 - -
Cma03g00729 362 Pfam SAM dependent carboxyl methyltransferase 38 360 IPR005299 GO:0008168
Cma03g00729 362 Gene3D - 6 347 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00729 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206474 491.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00729 Cma07g00473 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00729 Cma-Chr3:5842990 Cma03g00732 Cma-Chr3:5851716 2.05E-134 dispersed
Cma03g00729 Cma-Chr3:5842990 Cma03g00730 Cma-Chr3:5846692 3.98E-119 tandem
Cma01g01923 Cma-Chr1:12515046 Cma03g00729 Cma-Chr3:5842990 2.03E-108 wgd
Cma16g00627 Cma-Chr16:3233193 Cma03g00729 Cma-Chr3:5842990 1.51E-95 wgd
Cma03g00729 Cma-Chr3:5842990 Cma07g00473 Cma-Chr7:2067016 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1021 . . . . . . . . . . Cma03g00729 Cma07g00473 . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00657 . . Cme08g00871 . . . . . Bpe06g00040 . . . Cmo03g00756 Cmo07g00471 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00729 Cma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.537038 0.480316 0.15099