Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00732 ATGAAAGTACTCCATATGAATTCAGGAGTTGGGGACCTCAGCTATGCCAAGAACTCCTTACTTCAGCAAAAGGCAATATCCACTGCATGGCCTATCATAAAGGAAGCCCTTCAAGATTTCTGCACTCACAACATTCCAACCACTTTCGCCATCGCAGATTTGGGGTGTGCTTCGGGGCCTAACACCCTTATGATTGTCTCCAATTTAATCAAACAACTTCACCACTTTTATCGAAACCTTCCTAACCAATCACTCCGCTATCAAATCTTCTTCAACGATCTCCCTGCAAACGATTTCAATGCCATCTTTAGATCCTTGCCCGGTTTGTTGGACAATTTGAAGGCCCAAATTGGAGGTGAGTTTGGGCCATGTTTCTTCAATGGCGTGCCGGGTTCTTTTTATGGCAGGCTCTTTCCCGACAAAACTTTGCATTTTGTTCATTCTTCTTACAGTCTCCATTGGCTCTCCCAGGCTCCTGAAGGGATGGAGATGGAAAACAAAGGGAACATATTCATAGACAGTACAAGTCCAGAGAATGTGATTGAGGCGTTTCACAGGCAATTTCAAAAGGATTTTTCATTGTTTTTGAAGTGTCGGGGAGAAGAAGTGGTAGCAGGTGGAGGAATGGCTCTTACACTGTTAGGAAGAACAGACAAAAATTATTGTTACGCTTATCATCTCTTGAATTTAGCTCTCAACAAAATGGTTGCAGAGGGGATGGTGGAAAAGGAGAAAATGGTTAGATTCAACATACCCAACTTCATGCCAACTCCACAGGAAATAAAAGAAGAAATCCAAAAGGAAGGAAGCTTCATGATAAAGCGTCTTGAAGTGTCTAGAATTGATTGGAACTTCTACAATATTGATTCATCAAGTGTGGATGTGGGTGTTGATAGCAGTTATAACATTGCAAAGTGCATTAGATCTGTGATGGAACCACTTATGATCCCTCACTTTGGAGAACCCATTATGGAACAACTATTTGATAGGTACAGAAAAGTTGTTAAGGATGAGATGGCCAACAAAAAGATTGAGTTCATCAATCTCACTGTTTCTCTCGTTAGAATATAA 1071 41.18 MKVLHMNSGVGDLSYAKNSLLQQKAISTAWPIIKEALQDFCTHNIPTTFAIADLGCASGPNTLMIVSNLIKQLHHFYRNLPNQSLRYQIFFNDLPANDFNAIFRSLPGLLDNLKAQIGGEFGPCFFNGVPGSFYGRLFPDKTLHFVHSSYSLHWLSQAPEGMEMENKGNIFIDSTSPENVIEAFHRQFQKDFSLFLKCRGEEVVAGGGMALTLLGRTDKNYCYAYHLLNLALNKMVAEGMVEKEKMVRFNIPNFMPTPQEIKEEIQKEGSFMIKRLEVSRIDWNFYNIDSSSVDVGVDSSYNIAKCIRSVMEPLMIPHFGEPIMEQLFDRYRKVVKDEMANKKIEFINLTVSLVRI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5851716 5853330 + CmaCh03G007320.1 Cma03g00732 290303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00732 356 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 2 354 - -
Cma03g00732 356 Gene3D - 3 342 IPR042086 -
Cma03g00732 356 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 354 IPR005299 GO:0008168
Cma03g00732 356 Gene3D Vaccinia Virus protein VP39 18 343 IPR029063 -
Cma03g00732 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 355 IPR029063 -
Cma03g00732 356 Pfam SAM dependent carboxyl methyltransferase 36 355 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00732 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 499.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00732 Cma16g00627 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00729 Cma-Chr3:5842990 Cma03g00732 Cma-Chr3:5851716 2.05E-134 dispersed
Cma03g00730 Cma-Chr3:5846692 Cma03g00732 Cma-Chr3:5851716 0 dispersed
Cma03g00732 Cma-Chr3:5851716 Cma07g00473 Cma-Chr7:2067016 3.38E-151 dispersed
Cma03g00731 Cma-Chr3:5849254 Cma03g00732 Cma-Chr3:5851716 1.55E-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1008 . . . . Bpe15g00419 . . . . Cmo16g00683 Cma03g00732 . . . . . . . . . . . . . . . . . . . . Cone8ag0823 . . . . . Chy07g01249 . . . . . . . . . . . . Cma16g00627 . . . . Cpe14g00535 . . . . . . . Cla07g00819 Cam07g0883 Cec07g0936 Cco07g0924 Clacu07g0858 Cmu07g0861 Cre07g1220 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00732 Cma_Chr03 FPKM 9.932054 13.074102 0.949336 1.15677 0.0 0.0 0.526047 0.0 0.0 0.0