Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00734 ATGATCTTATTCCGTCGGCCTCACATTTGGAGAAATTTTACAGTTTTGGCACTCGCCGGAACGGAGACGAAGGATTATCCTCATCATCTAAATACAAAATTGGAATCTTTAATCGTGAACACTCATTTCGCAAATCAGGTAGATTTGGCCGAAGTTAACAGCGAGTTGAAAAAATTAGTGAGAACCAGTCAGTTGAAAGATGCACGCGACATGTTTGATAAAATGCCTCAAAGGGATGGGGTTTCGTGGACTAATATTATTTCTGGGTATGTCAATGCCTCAGACTCCACTGAAGCCTTGCTTTTGTTCTCTAAGATGTGGCTTCAGTCTGAGCTCCGAATTGATCCCTTTGTGCTTAGTCTTGGTTTTAAGGCTTGTGGGCTCGGTTTGAATTGTTCTTATGGTACAAATTTGCATGGGTTTTCAATCAAAACAGGTCTAGTAAACTCTGTTTTCGTGGGTAGCGCTCTTCTTGACATGTATATGAAAATTGGAGAAGTTGGGAGAAGTTGTGAAGTGTTCGATGAAATGCCCACAAGAAATACTGTGACTTGGACGGCAGTTATAACTGGGCTTGTTCGTGCTGGTTATAACGAGAAAGGTCTGGCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCAGTGCTGATTCAGGTGCACTGAATCATGGAAGAGCAATTCATACACAGACATTGAAGAAAGGATTCGATGAGAGCTCCTTCGTGGCCAATTCGCTGGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGCTTGGAAAGATGAGAGCTCCCGATGTTGTTTCGTGGACGACAATGGTAACGACCTACGTTCAAATGGGTAAGGAGGAATGCGGGATTCAAGCATTTAGAAGAATGCAGGACAGCAATGTGATTCCAAATGAATATACATTTGCTGCTGTTATCTCTGGTTGTGCCAATCTTGCACGGTTGAAGTGGGGGGAACAGCTACATGCTCATGTTTTACGTGTGGGGTTTCTGAATGCTTTGTCAGTTGCTAATTCTATCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCAGTTTCAAAGCTATTTTGTTCCATGAATTTTAAAGATGTCATTACTTGGAGCACTATAATTGCAGCATATTCTCAAGTAGGCTATGGCAAAGAAGCTTTCGAGTATCTATCACAGATGAGAAGCGAAGGATCGAAACCAAACGAGTTTGCCCTGGCTAGCGTTCTTAGTGTATGTGGAAGTATGGCGATTCTCGAGCAGGGGAAGCAATTACATGCTCATGTTTTGTCTGTTGGGTTAGAACAAACAGCCATGGTATGTAGTGCCCTTATTATTATGTACGCAAAATGTGGGAGCATCACGGAAGCTTCTAAAATATTTATGGATTCAGTGAAAGATGATATTATTTCATGGACAGCTATGATCAGTGGGTATGCGGAACATGGGCATAGCCAAGAAGCCATTGAATTGTTTGAAAGTATCCAAAAGGTTGGTTTGAGACCAGACTCGGTGACCTTCATTGGCGTTCTTACTGCGTGTAGCCATGCAGGAATGGCTGACCTTGGCTTCCACTACTTCAACTCAATGAGTAAAGATTATCACATCACTCCTTCAAAAGAACACTATGGATGCATGATTGATCTTCTTTGTCGAGCAGGGCGATTAAATGACGCAGAGAGCTTGATCAAAAGCATGCCATTTCAACCGGACGATGTAGTCTGGTCTACTTTGCTGAGGGCATGTAGAATACATGGTGATGTTGATTGTGGACAACGTGCTGCTGCAGAAGTTCTAAAGTTAAACCCAAATTGTGCTGGGACTCACATAACCTTAGCAAACATTTTTGCGGCTAAGGGAAAGTGGAAGGAAGCAGCAAATATAAGAATGATAATGAAATCAAAGGGAGTGGTTAAGGAGCCAGGATGGTCTTCGATAAAGCTCAAGGATAGCGTTTTCGCGTTCGTTGCTGGAGATCGTTCTCCGCCACAAGGAGAAGACATATACAGAATGCTGGAGGAGTTGGCTTCAGGAATGGAAATCTATATTCTTGAATTGAACCATTTAGTTACTGATATGGAGGAATAG 2136 42.23 MILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLESLIVNTHFANQVDLAEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSTEALLLFSKMWLQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEVGRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQMGKEECGIQAFRRMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFLNALSVANSIMTMYSKCGELASVSKLFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGSKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTAMVCSALIIMYAKCGSITEASKIFMDSVKDDIISWTAMISGYAEHGHSQEAIELFESIQKVGLRPDSVTFIGVLTACSHAGMADLGFHYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLNDAESLIKSMPFQPDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLNPNCAGTHITLANIFAAKGKWKEAANIRMIMKSKGVVKEPGWSSIKLKDSVFAFVAGDRSPPQGEDIYRMLEELASGMEIYILELNHLVTDMEE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5858869 5861004 - CmaCh03G007340.1 Cma03g00734 290305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00734 711 SUPERFAMILY TPR-like 181 642 IPR011990 GO:0005515
Cma03g00734 711 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Cma03g00734 711 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Cma03g00734 711 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Cma03g00734 711 TIGRFAM PPR: pentatricopeptide repeat domain 559 582 IPR002885 -
Cma03g00734 711 TIGRFAM PPR: pentatricopeptide repeat domain 486 520 IPR002885 -
Cma03g00734 711 Pfam E motif 601 662 IPR046848 -
Cma03g00734 711 Gene3D Tetratricopeptide repeat domain 303 434 IPR011990 GO:0005515
Cma03g00734 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cma03g00734 711 PANTHER - 374 486 - -
Cma03g00734 711 PANTHER - 23 385 - -
Cma03g00734 711 PANTHER - 484 704 - -
Cma03g00734 711 PANTHER OS01G0913400 PROTEIN-RELATED 484 704 - -
Cma03g00734 711 PANTHER OS01G0913400 PROTEIN-RELATED 23 385 - -
Cma03g00734 711 PANTHER OS01G0913400 PROTEIN-RELATED 374 486 - -
Cma03g00734 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Cma03g00734 711 Pfam PPR repeat family 281 330 IPR002885 -
Cma03g00734 711 Pfam PPR repeat family 484 531 IPR002885 -
Cma03g00734 711 Pfam PPR repeat family 180 226 IPR002885 -
Cma03g00734 711 Gene3D Tetratricopeptide repeat domain 547 619 IPR011990 GO:0005515
Cma03g00734 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cma03g00734 711 Pfam PPR repeat 457 482 IPR002885 -
Cma03g00734 711 Pfam PPR repeat 385 414 IPR002885 -
Cma03g00734 711 Pfam PPR repeat 357 380 IPR002885 -
Cma03g00734 711 Pfam PPR repeat 81 106 IPR002885 -
Cma03g00734 711 Pfam PPR repeat 553 582 IPR002885 -
Cma03g00734 711 Gene3D Tetratricopeptide repeat domain 435 546 IPR011990 GO:0005515
Cma03g00734 711 Gene3D Tetratricopeptide repeat domain 138 242 IPR011990 GO:0005515
Cma03g00734 711 Gene3D Tetratricopeptide repeat domain 42 128 IPR011990 GO:0005515
Cma03g00734 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00734 - - - cmax:111478417 1426.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00734 Cma-Chr3:5858869 Cma16g00061 Cma-Chr16:269594 5.47E-44 dispersed
Cma17g00443 Cma-Chr17:2641765 Cma03g00734 Cma-Chr3:5858869 6.08E-08 dispersed
Cma03g00734 Cma-Chr3:5858869 Cma17g01185 Cma-Chr17:8199730 4.50E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1005 . . . Bda10g00142 . . . . . . Cma03g00734 . Car03g00669 . . . . . . . . . . . . . . . . . . . . . . Lsi01g00663 . . . . . . . . . . . . Cmo03g00764 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009680 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00734 Cma_Chr03 FPKM 0.482678 0.352108 0.656989 0.977852 2.167021 1.739312 2.190474 1.228777 0.933298 0.877782