Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00738 ATGGAAAACGATGCTGGTGAAGGGAATTCTGGATATACAGGATACTCTAGGGTTAGGCTCAATGAAAGAATCCTTTCTTCCATGTCTCGGAGATCTATGGCCGCTCACCCTTGGCATGATTTGGAGATCGGACCTGGTGCACCGTCAGTTTTCAACTGTGTTGTTGAAATAGGCAAAGGCAGCAAGGTTAAATATGAGCTGGATAAGGCCAGTGGCCTTATAAAAGTCGACCGTGTACTTTACTCCTCAGTTGTTTACCCACACAATTATGGTTTCATCCCGCGCACACTTTGTGAAGATAGTGATCCTATGGATGTTTTGGTGCTGATGCAGGAGCCTGTGCTGCCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATCGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCCGATGACCCTGAATTCCGACACTATAAAGACATCAAAGAGATTCCCCCACACCGGCTGGCCGAAATTCGCCGATTCTTCGAGGACTACAAGAAGAACGAGAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCAGAGGCTGCCATTGATGCCATCAAATACTCCATGGACTTGTATGCTGCCTACATTGTTGAAAGCTTGAGGCAGTAA 645 46.67 MENDAGEGNSGYTGYSRVRLNERILSSMSRRSMAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTLCEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYKDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIDAIKYSMDLYAAYIVESLRQ 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5877909 5881020 - CmaCh03G007380.1 Cma03g00738 290309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00738 214 CDD pyrophosphatase 50 202 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma03g00738 214 Pfam Inorganic pyrophosphatase 53 204 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma03g00738 214 PANTHER BNAC07G03580D PROTEIN 18 208 - -
Cma03g00738 214 Hamap Inorganic pyrophosphatase [ppa]. 49 205 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma03g00738 214 SUPERFAMILY Inorganic pyrophosphatase 30 209 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma03g00738 214 Gene3D Inorganic pyrophosphatase 32 210 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma03g00738 214 ProSitePatterns Inorganic pyrophosphatase signature. 100 106 - -
Cma03g00738 214 PANTHER INORGANIC PYROPHOSPHATASE 18 208 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00738 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101222890 410.609
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00738 Cma07g00478 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00440 Cma-Chr3:4599343 Cma03g00738 Cma-Chr3:5877909 5.17E-126 dispersed
Cma03g00738 Cma-Chr3:5877909 Cma07g00967 Cma-Chr7:4678251 2.99E-126 dispersed
Cma03g00738 Cma-Chr3:5877909 Cma07g00478 Cma-Chr7:2088913 7.77E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00738 Cma_Chr03 FPKM 34.343037 30.74897 28.811028 30.738937 13.515252 12.534112 13.885083 28.75106 30.350613 30.621838