Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00740 ATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAACGAAGCCGCATGCGGCGGTGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGGACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTGAACGACATTCAAAAACTAAATCAAGAAGCCAAATCAACCCACAACGCGAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCCGACATGGTCTCAATCCTCCGCAGAGCAAAACTCCTTAAAGAAAAATTGGCCTCTCTCGACCAATCCAACGCCGTCAACCGCCTGGTATCCGTCGCATACGGCGAAGGAACCACCGTGGACCGGACAAGAACTTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGATGGAATTCCAGTGTTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATTTGAGAAGAAGGTATTTTAGTGCAAATGGGGAACAACCCAGTGAAGAAAAGATTGAGAAGATTATGTCTGGGAGTCTGAAATTGGATTCGTTTGGAGGGAATTTGAGCGAGGCCGAGTTGAGAGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAACTTCATCAGGTGTTTTTGGATATGGCGATTCTGGTTGAGAGTGAAGGGGAGAAGATAGAGAACATTGAGGAGAATGTGGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGATTTGGGCCGTCATTTTTGTTATATTGCTTATTTGCATTGTTTCAATGTTGGTCATTTAA 918 45.53 MNDLMTKSFLSYVELKKQAQNEAACGGGGGFDIESGGQELNPTEEQNLSLFFGQVDEIKTQMEETTNLLNDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAVNRLVSVAYGEGTTVDRTRTSITNGLRVKLREMMMEFQCLREKVVADHKEDLRRRYFSANGEQPSEEKIEKIMSGSLKLDSFGGNLSEAELRDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIENIEENVAKAGKFINGGTRSLYYANQMKRKNKKWVYWIWAVIFVILLICIVSMLVI 305
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5887631 5888548 + CmaCh03G007400.1 Cma03g00740 290311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00740 305 PANTHER SYNTAXIN-112 4 301 - -
Cma03g00740 305 Pfam Syntaxin 51 246 IPR006011 GO:0016020
Cma03g00740 305 CDD SNARE_syntaxin1-like 217 270 - -
Cma03g00740 305 PANTHER SYNTAXIN 4 301 IPR045242 -
Cma03g00740 305 Gene3D - 207 305 - -
Cma03g00740 305 CDD SynN 51 198 IPR006011 GO:0016020
Cma03g00740 305 SMART SynN_4 43 170 IPR006011 GO:0016020
Cma03g00740 305 SUPERFAMILY t-snare proteins 47 266 IPR010989 GO:0016020|GO:0016192
Cma03g00740 305 Gene3D - 48 176 - -
Cma03g00740 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Cma03g00740 305 Coils Coil 55 82 - -
Cma03g00740 305 SMART tSNARE_6 206 273 IPR000727 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00740 Cma-Chr3:5887631 Cma13g00676 Cma-Chr13:6245413 9.55E-62 dispersed
Cma03g00740 Cma-Chr3:5887631 Cma07g01172 Cma-Chr7:6428287 3.23E-68 transposed
Cma03g00740 Cma-Chr3:5887631 Cma03g00248 Cma-Chr3:3546408 5.97E-68 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00740 K08486 - csv:101217836 512.301