Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00740 | ATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAACGAAGCCGCATGCGGCGGTGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGGACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTGAACGACATTCAAAAACTAAATCAAGAAGCCAAATCAACCCACAACGCGAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCCGACATGGTCTCAATCCTCCGCAGAGCAAAACTCCTTAAAGAAAAATTGGCCTCTCTCGACCAATCCAACGCCGTCAACCGCCTGGTATCCGTCGCATACGGCGAAGGAACCACCGTGGACCGGACAAGAACTTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGATGGAATTCCAGTGTTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATTTGAGAAGAAGGTATTTTAGTGCAAATGGGGAACAACCCAGTGAAGAAAAGATTGAGAAGATTATGTCTGGGAGTCTGAAATTGGATTCGTTTGGAGGGAATTTGAGCGAGGCCGAGTTGAGAGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAACTTCATCAGGTGTTTTTGGATATGGCGATTCTGGTTGAGAGTGAAGGGGAGAAGATAGAGAACATTGAGGAGAATGTGGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGATTTGGGCCGTCATTTTTGTTATATTGCTTATTTGCATTGTTTCAATGTTGGTCATTTAA | 918 | 45.53 | MNDLMTKSFLSYVELKKQAQNEAACGGGGGFDIESGGQELNPTEEQNLSLFFGQVDEIKTQMEETTNLLNDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAVNRLVSVAYGEGTTVDRTRTSITNGLRVKLREMMMEFQCLREKVVADHKEDLRRRYFSANGEQPSEEKIEKIMSGSLKLDSFGGNLSEAELRDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIENIEENVAKAGKFINGGTRSLYYANQMKRKNKKWVYWIWAVIFVILLICIVSMLVI | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5887631 | 5888548 | + | CmaCh03G007400.1 | Cma03g00740 | 290311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00740 | 305 | PANTHER | SYNTAXIN-112 | 4 | 301 | - | - | |
| Cma03g00740 | 305 | Pfam | Syntaxin | 51 | 246 | IPR006011 | GO:0016020 | |
| Cma03g00740 | 305 | CDD | SNARE_syntaxin1-like | 217 | 270 | - | - | |
| Cma03g00740 | 305 | PANTHER | SYNTAXIN | 4 | 301 | IPR045242 | - | |
| Cma03g00740 | 305 | Gene3D | - | 207 | 305 | - | - | |
| Cma03g00740 | 305 | CDD | SynN | 51 | 198 | IPR006011 | GO:0016020 | |
| Cma03g00740 | 305 | SMART | SynN_4 | 43 | 170 | IPR006011 | GO:0016020 | |
| Cma03g00740 | 305 | SUPERFAMILY | t-snare proteins | 47 | 266 | IPR010989 | GO:0016020|GO:0016192 | |
| Cma03g00740 | 305 | Gene3D | - | 48 | 176 | - | - | |
| Cma03g00740 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 211 | 273 | IPR000727 | - | |
| Cma03g00740 | 305 | Coils | Coil | 55 | 82 | - | - | |
| Cma03g00740 | 305 | SMART | tSNARE_6 | 206 | 273 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00740 | Cma-Chr3:5887631 | Cma13g00676 | Cma-Chr13:6245413 | 9.55E-62 | dispersed | |
| Cma03g00740 | Cma-Chr3:5887631 | Cma07g01172 | Cma-Chr7:6428287 | 3.23E-68 | transposed | |
| Cma03g00740 | Cma-Chr3:5887631 | Cma03g00248 | Cma-Chr3:3546408 | 5.97E-68 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00740 | K08486 | - | csv:101217836 | 512.301 |