Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00742 ATGGCTGTCTCTAGATTATCCGCCTGCGTAGCTATGGCTGCGGCTGCTGCATCCTTGCCCACGATCGCCAACCACGCCTACGCCGACTCTCCATTTCGATTCTCGCCTTTCTCTTCTTCACAGGCTTCTCAGGAGGACAAGTCTTCCGATGACAAATCAGACGCGAAACCCGCGGCTGAGGAGCCGAGTAAGTCTGGTTTTGATGCTGAAGCATTGGAGAGAGGTGCTAAAGCTCTCCGAGAAATCAATAGTTCCCCCAACGCTAAACAGGTTTTTGAGCTGATGAAAAAGCAGGAACAGGCGCGTCTTGCTGAGTTGGCCGCTGAAAAGGCTCATTACGAAGTCATTCAAGCTCAAACTGATATAGAGAGACAAAGGAAATTGGCTGAAGAACAAAGAAATCTAATCCAACAACAAGCACAGGCTAAGGCACAAATGCTGCGCTATGAAGATGAGTTGGCCAGAAAAAGAATGCAGACTGACCACGAAGCTCAAAGGCGACATAATGTTGAGTTAGTTGGAATGCAAGAACAATCATCCATAAGAAAAGAAAAAGCAAGACAAGTAACTGAGGAGCAGATACAAGCACAACAGCGTCAGACTGAGAAAGAGAGAGCTGAAATTGAACGGGAAACCATAAGAGTGAAGGCTATGGCAGAAGCTGAGGGTCGTGCACATGAAGCAAAGCTGACTGAAGACCATAACCGCAGGATGCTAATGGAACGAATTAGTGGCGAGAAAGAAAAATGGCTCGCTGCAATTAACACGACTTTTAGTCATATTGAAGGGAGTGTGAGGATTTTACTGACTGATCGCAATAAGTTGGTTATGGCTGTTGGTGGAGCTACTGCATTAGCAGCGGGAGTTTACACTACCAGGGAAGGTGCTAGAGTTGTCTGGGGTTATGTCAATAGGTTATTGGGGCAACCGTCACTGATTAGAGAATCCTCTGTTACGAGATTTCCAGGTTCCAAGATAATACCCTGGGTAAAGAACAAAGCTGCTGCATTTTCTACGGGAGCTGGGGCTGCAGCTCTCGCTGAAAATAAAAATAGTCTTGGGAATATTGTCCTCCATCCTTCACTGAAAAGGAGAATTGAACAACTTGCTAGAGCTACTGCAAACACCAAAGCTCATGAGGCACCCTTCCGTAATATGCTATTTTATGGACCTCCTGGGACCGGTAAAACTATGGTTGCAAAAGAGATTGCTCGAAAATCGGGTTTGGATTATGCCATGATGACTGGTGGAGATGTTGCACCTTTGGGCCCACAAGCCGTTACTAAAATACACCAAATATTTGACTGGGCTAAAAATTCTAGGAAAGGCCTATTGCTTTTCATCGACGAGGCGGATGCTTTTCTCTGCGAGCGCAACAGTACAAGGATGAGTGAAGCTCAGCGAAGTGCTCTAAACGCATTGCTATTCCGAACTGGTGATCAGTCGAGAGATATAGTTCTTGTACTTGCAACAAACAGACCAGGCGATCTCGACAGTGCTGTGACCGACCGAATGGATGAAGTGATTGAGTTCCCACTCCCTGGTGAGGAAGAGCGCTTCAATCTGCTGAAGCTTTATCTAAACAAGTACCTAAGCAATCAAAATGAGGACACATCCAAGCAAGGTTTCTCATTCAAGAAAAGCCCCCAACAAATAATCATACGAGACATCACCGACAATGTGCTCCGAGACGCAGCCCGAAAAACTGAAGGGTTCTCAGGCCGTGAGATTGCAAAGCTCATGGCGGGCGTTCAGGCAGCTGTTTACGGGCGGCCAGACTGTGTTTTGGACTCCACATTGTTAAAGGAGATCGTTGATTATAAGACAAAGCACGAAAACTCTTGCGTTTCATCGGAGCATCTTGTCGGCGGTGGCGGATCCGGTGATCTGACGGCTACTATGATATCGTCGGCGGACTTGCTTTTCATTTTATTTAAGTTTTTGATAATGGACCGTCTTTGCTATCGTGGAGGAACCAACAGTGACGGTGGAAGGAGGTTGCTGCGTGTGCGGCGACACGCGTCGATCTGGTGGCCCAGTCCCCGTCTTCCATGGTTTCAAGCATTTGCCACGCTTTTTTTCCTTTTAGTTTGA 2094 46.94 MAVSRLSACVAMAAAAASLPTIANHAYADSPFRFSPFSSSQASQEDKSSDDKSDAKPAAEEPSKSGFDAEALERGAKALREINSSPNAKQVFELMKKQEQARLAELAAEKAHYEVIQAQTDIERQRKLAEEQRNLIQQQAQAKAQMLRYEDELARKRMQTDHEAQRRHNVELVGMQEQSSIRKEKARQVTEEQIQAQQRQTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLMERISGEKEKWLAAINTTFSHIEGSVRILLTDRNKLVMAVGGATALAAGVYTTREGARVVWGYVNRLLGQPSLIRESSVTRFPGSKIIPWVKNKAAAFSTGAGAAALAENKNSLGNIVLHPSLKRRIEQLARATANTKAHEAPFRNMLFYGPPGTGKTMVAKEIARKSGLDYAMMTGGDVAPLGPQAVTKIHQIFDWAKNSRKGLLLFIDEADAFLCERNSTRMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRMDEVIEFPLPGEEERFNLLKLYLNKYLSNQNEDTSKQGFSFKKSPQQIIIRDITDNVLRDAARKTEGFSGREIAKLMAGVQAAVYGRPDCVLDSTLLKEIVDYKTKHENSCVSSEHLVGGGGSGDLTATMISSADLLFILFKFLIMDRLCYRGGTNSDGGRRLLRVRRHASIWWPSPRLPWFQAFATLFFLLV 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5891880 5896603 + CmaCh03G007420.1 Cma03g00742 290313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00742 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 609 IPR027417 -
Cma03g00742 697 Coils Coil 89 109 - -
Cma03g00742 697 PANTHER PUTATIVE ATP-ASE 1 611 IPR039188 GO:0005739|GO:0007005
Cma03g00742 697 Coils Coil 119 159 - -
Cma03g00742 697 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 611 - -
Cma03g00742 697 SMART AAA_5 382 515 IPR003593 -
Cma03g00742 697 MobiDBLite consensus disorder prediction 45 72 - -
Cma03g00742 697 ProSitePatterns AAA-protein family signature. 485 504 IPR003960 GO:0005524|GO:0016887
Cma03g00742 697 Gene3D - 337 533 IPR027417 -
Cma03g00742 697 Pfam ATPase family associated with various cellular activities (AAA) 386 513 IPR003959 GO:0005524|GO:0016887
Cma03g00742 697 Coils Coil 187 214 - -
Cma03g00742 697 Pfam ATPase family AAA domain-containing protein 3, N-terminal 47 314 IPR021911 -
Cma03g00742 697 MobiDBLite consensus disorder prediction 34 72 - -
Cma03g00742 697 CDD AAA 368 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00742 K17681 ATAD3A_B; ATPase family AAA domain-containing protein 3A/B - csv:101221464 1060.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00742 Cma07g00483 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00474 Cma-Chr2:2487053 Cma03g00742 Cma-Chr3:5891880 0 dispersed
Cma03g00742 Cma-Chr3:5891880 Cma20g00940 Cma-Chr20:4715845 0 dispersed
Cma07g00483 Cma-Chr7:2106419 Cma03g00742 Cma-Chr3:5891880 1.81E-46 transposed
Cma03g00742 Cma-Chr3:5891880 Cma07g00482 Cma-Chr7:2103239 5.29E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g982 . . Bda04g00046 . . . Bma09g00077 . . . Cma03g00742 Cma07g00483 Car03g00678 Car07g00425 Sed14g1124 Cpe19g00813 Cpe10g00618 Bhi03g01304 Tan03g1985 Cmetu08g0193 . Hepe04g1520 . . Cla01g01914 Cam01g2001 Cec04g1657 Cco04g1719 Clacu01g2021 Cmu01g1897 Cre04g1573 . . Cone6ag1626 Cone9ag1551 Lsi01g00670 . . Cme08g00853 Blo05g00798 . . . . Bpe06g00044 . . . Cmo03g00770 Cmo07g00481 . . . . . . . . . . . . . . . . . . . . . Csa06g03245 Chy02g00643 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007878 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00742 Cma_Chr03 FPKM 9.013565 8.212461 8.733729 8.522171 16.355282 14.720086 16.368204 16.656897 15.943317 13.571021