Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00745 ATGGACAATAGTATTCCTTTATCGGTAATTCGATACCGAGAATGTCTGAAGAATCACGCAGCAAGTACTGGAGGCTACGTTCTAGACGGCTGCGGCGAGTTCATGCCAAATGGAGAGGATGGAACTCCTGAGGCCTCTAAGTGTGCAGCATGTGAATGCCATCGGAACTTTCACCGAAAAGAGATGAGAGACGAGCTGCTCTCACAGCAAGCTTTCCTCGGTGCTTTCTTCATCTCCAAATCGGTCAGAAACAATGGCCATCGCAGTGATGGGCCTCGTCACCATCATTTACCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCCAGTGAGGGCCTGAATATGTATTATCCGTCTGATAATGGAGCCCGGGAGCTGTTCTGTCAGCAGACACAACTGATGAAGAAACGATTCAGGACAAAGTTCACACAGGAACAGAAGGAGAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAGTGCAGCAGTTCTGCGATGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAAAAAACAAGCCATGAAGAAGAAACACATGTAA 636 47.01 MDNSIPLSVIRYRECLKNHAASTGGYVLDGCGEFMPNGEDGTPEASKCAACECHRNFHRKEMRDELLSQQAFLGAFFISKSVRNNGHRSDGPRHHHLPAVPISSMMMAFGGGSNGAPDESSSEGLNMYYPSDNGARELFCQQTQLMKKRFRTKFTQEQKEKMVEFAEKLGWKIQKHDELEVQQFCDEVGVRRQVFKVWMHNKKQAMKKKHM 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5899158 5899793 - CmaCh03G007450.1 Cma03g00745 290316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00745 211 Gene3D - 135 208 - -
Cma03g00745 211 SUPERFAMILY Homeodomain-like 145 208 IPR009057 -
Cma03g00745 211 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 147 204 IPR006455 -
Cma03g00745 211 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 11 62 IPR006456 -
Cma03g00745 211 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 61 IPR006456 -
Cma03g00745 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 7 209 - -
Cma03g00745 211 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 209 - -
Cma03g00745 211 Pfam ZF-HD protein dimerisation region 10 62 IPR006456 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00745 Cma07g00485 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00745 Cma-Chr3:5899158 Cma05g00527 Cma-Chr5:2518379 7.20E-57 dispersed
Cma16g00621 Cma-Chr16:3204804 Cma03g00745 Cma-Chr3:5899158 1.13E-31 wgd
Cma03g00745 Cma-Chr3:5899158 Cma05g00248 Cma-Chr5:1049849 1.55E-63 wgd
Cma03g00745 Cma-Chr3:5899158 Cma07g00485 Cma-Chr7:2110438 1.27E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34638 PF04770 ZF-HD_dimer 3.40E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00745 - - cmos:111453071 426.017