Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00747 ATGATGCAACGCTGTGGCAGCTACCAATGCTACTCGGCGGGAGAGTGTTCATGTGGGGCGTTCTATGGGCAGCAGGGCAGCTACTTCTCCACGCCCGCCTACAACAATTACTATGAATCTGAACATTATTCTTTTGACTCGTCCTCTCCGGTGGATTGTACGCTCTCTCTCGGAACACCCTCGACTCGTATGACGGAGTACGACGAGAAGCGCCGTGAGGAGCAGCACTCTGCTTCTAATTTTGCCTGGGATTTGTCTCGTACCAAACATGGTCACTCCTCCAAGACCAGTCGCCGTAGTGGCAATACTGGCGGTGATAAATCCAGAGCCAATGGAGACCAAATGTTCTCCCGCCACTGCGCTAATTGCGACACCACCACCACCCCCCTCTGGCGCAATGGCCCTAGCGGTCCTAAGTCGTTGTGCAATGCGTGTGGGATTAGATACAAGAAGGAAGAGAGGAAAGCGGCGAGTTCAGGGCAGCAGGCTAATTCGATGTACAAGAATGAGGCCAGCTCATGGCTTCAGCATCATTCCCACAGCCAGAAAACCCCGAGATTCCCACATGGAATTACCAATGATCTGAATCCCGGCGTCGCCTTCCTCTCATGGAGCCTCAATGACACAGAGCAGCCTCAGCTAATTTTGTTGGCTGCTTCTTATTTTTCCATTATACGTCAATTTCCCCAGTGGAATATCAAAGCTGACGAGTTTGACCGAGTTATATCATATAATAACCTGGAAATCAAATCGTGCACCTCAAGCTTCGAGTTGCTAACGGAGGAGATGATATCATCTCAGCCAATCACAACGCGACGTCTGTACTTCACTCCACCTGAATCTCTCTTCAAAACCCAGCTTCTACACACAAATCATTTACCACCGCCGATGGCCAGAAGAACCCGCCGGAAGTTACTCTTACAGTCCGAGTCTCAAACCGAGGCCGATCCACCGTCTAAGATTTCGTTCCGAACTACAGAAATACGGAAGATTTCTTCCACTCGAAAACCGGACAAACCACAGATATCAACTGATGGCGGAGGCGACCGGACTCGAGCATTCCCGAACCAGGATGGTCCTGTCAAATCTTTATCGTCTTCGGATGTAATTTGTACAGCGATCGATCATTTACGCCGTTCGGATCCCCTTCTGATAAGGCTATTAGATTCATGCGAATCCCCCAATTTCAAGTCCAATCCACCGTTTCTAGCAATAACAAAGAGCATCCTCTACCAGCAGCTCGCTACGAAGGCCGCCGAATCGATCTACAATCGCTTCGCGTCGCTATGCGGCGGAGAGGCGGCAGTACTACCGGACGCCGTACTTGGACTCTCGCCTCAACAGCTGCGAGTAGTCGGAGTTTCGGGTAGAAAAGCAAGTTACCTTCATGACCTAGCGACCAAATTCGTAGAGGGCACTTTGTCGAATTCGTCGATTCTAGAGATGGACGACGAGACTCTACTGAGTGCGTTGACGGGGGTGAAGGGTATCGGCGTTTGGTCAGTGCACATGTTCATGATTTTTACTCTGCACCGGCCGGATGTGCTGCCGGTGGGGGATTTGGGCGTGAGAAAAGGGGTGCAGAGGTTGTACGGACTGAAAGAATTGCCAAAGCCAGTGGAGATGGAGAAACTTTGTGAAAAATGGAAGCCGTACAGGTCGATGGGGGCTTGGTATATGTGGAGGCTGATGGAAATGAAGGGAATCGCGAAGAATGATGGCGATTTGAAGAAGAACACGGCAAACGGCGGCGGCGGCGACGTTGTAATGTGA 1773 50.87 MMQRCGSYQCYSAGECSCGAFYGQQGSYFSTPAYNNYYESEHYSFDSSSPVDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLILLAASYFSIIRQFPQWNIKADEFDRVISYNNLEIKSCTSSFELLTEEMISSQPITTRRLYFTPPESLFKTQLLHTNHLPPPMARRTRRKLLLQSESQTEADPPSKISFRTTEIRKISSTRKPDKPQISTDGGGDRTRAFPNQDGPVKSLSSSDVICTAIDHLRRSDPLLIRLLDSCESPNFKSNPPFLAITKSILYQQLATKAAESIYNRFASLCGGEAAVLPDAVLGLSPQQLRVVGVSGRKASYLHDLATKFVEGTLSNSSILEMDDETLLSALTGVKGIGVWSVHMFMIFTLHRPDVLPVGDLGVRKGVQRLYGLKELPKPVEMEKLCEKWKPYRSMGAWYMWRLMEMKGIAKNDGDLKKNTANGGGGDVVM 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5902812 5905501 - CmaCh03G007470.1 Cma03g00747 290318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00747 590 ProSiteProfiles GATA-type zinc finger domain profile. 114 150 IPR000679 GO:0006355|GO:0043565
Cma03g00747 590 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 308 573 - -
Cma03g00747 590 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 154 - -
Cma03g00747 590 CDD ZnF_GATA 120 151 IPR000679 GO:0006355|GO:0043565
Cma03g00747 590 Gene3D - 116 183 IPR013088 GO:0006355|GO:0008270
Cma03g00747 590 Gene3D Hypothetical protein; domain 2 401 512 - -
Cma03g00747 590 ProSitePatterns GATA-type zinc finger domain. 120 145 IPR000679 GO:0006355|GO:0043565
Cma03g00747 590 MobiDBLite consensus disorder prediction 64 78 - -
Cma03g00747 590 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 308 573 - -
Cma03g00747 590 SUPERFAMILY DNA-glycosylase 399 563 IPR011257 GO:0003824|GO:0006281
Cma03g00747 590 MobiDBLite consensus disorder prediction 310 328 - -
Cma03g00747 590 Gene3D - 376 562 - -
Cma03g00747 590 MobiDBLite consensus disorder prediction 308 364 - -
Cma03g00747 590 SMART endo3end 410 565 IPR003265 GO:0006284
Cma03g00747 590 SMART GATA_3 114 171 IPR000679 GO:0006355|GO:0043565
Cma03g00747 590 Pfam GATA zinc finger 120 154 IPR000679 GO:0006355|GO:0043565
Cma03g00747 590 Pfam HhH-GPD superfamily base excision DNA repair protein 407 550 IPR003265 GO:0006284
Cma03g00747 590 MobiDBLite consensus disorder prediction 64 114 - -
Cma03g00747 590 CDD ENDO3c 402 563 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00747 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101219253 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00747 Cma-Chr3:5902812 Cma17g00353 Cma-Chr17:1943280 3.81E-15 dispersed
Cma01g01914 Cma-Chr1:12478966 Cma03g00747 Cma-Chr3:5902812 2.08E-92 wgd
Cma03g00747 Cma-Chr3:5902812 Cma04g00757 Cma-Chr4:3856815 3.97E-39 wgd
Cma03g00747 Cma-Chr3:5902812 Cma07g00487 Cma-Chr7:2116069 1.26E-130 wgd
Cma03g00747 Cma-Chr3:5902812 Cma09g00154 Cma-Chr9:658957 4.19E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002166 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 2 2 2 2 2 4 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34639 PF00730 HhH-GPD 4.90E-21 CL0198 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00747 Cma_Chr03 FPKM 20.311172 22.05855 2.538476 3.029996 3.055499 2.8581 3.398305 21.262735 22.838346 22.635822