Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00748 ATGGATTCCAATACGCTTTTGGACCCAATGGAGATGAAGGTCGGGGAACTCTTGAAGGAATTTCAGCTTGACTACTCCCCTGATCTTGTTAAGCTCGTTGAGGACACAGTGTCAACTATAAAAAAGGCAATTAAACTCATTCCAGATGACTTGAAGGTTACTGCGGCCGCAGCTCCGGGTTTTATCATGGATATTGGCTCAGACAAAGTGGAATTCAAATTTAGGAAGCCAAAATCAATTAAAATCGGTGGTAGTTATGCCTTTCAAGGCATTGCAAAACCTGATGTAAATGTTGATCTTTTAGTTGGCTTGCCAAAGGAGTGTTTCCACGAGAAAGACTACCTCAATTACCGGTACCATGCTAAAAGGTTCCTTTACCTCTGCACAATCAAAAAGTATTTGAACTCATCTTCAATGTTTTCAAAGGTTGAATGGTCCACACTTCAGAATGAGGCTCGGAAACCTGTCTTAATTGTCCATCCAGCTTTGGAAGAGCTGAAGGTAGCTCCTGGATTCTTTGTCAGAATAATTCCAACAATAGCAGCATCCTTTTTTAGCATTTCAAAATTGAATCTCAAACGAAACAACATCCATGCCTTGAACCAAGGGAGCTTACTTGCAGCTACACCTAAGTATAACACTAGCATTTTGGAAGATATGTACTTCGAGGATACTTCAGAAATGGTTAAGAAGCCTTTTCTTGAATCAAAAAGTTTGTTAGAAACTTTAATTCTACTAAAGGTTTGGGCTCGGCAGAGAGCTTCAATATATGTGCATGATTGCTTGAACGGATTTTTAATAGCTGTAATATTATCATACCTCATTACTCAAAATAAAATAAATCATTCAATGACGACAATTCAGATGTTCCGTGTTGCAGTGAAATTTATAGCCTCTTCGAATTTATGGAATCACGGGCTCTATTTTAAGCTTGGACCTCAGAGCACTATTTCAAAGGAGGAAAAGAAGCAATATAAAGATTTATTTCCTGTGGTCATCTGCAATCCGTCTTCCAACTTTAACATTGCATTTCGAATATCACAGTCAGGTTTCGCTGAGCTTCAAGATGAGGCTGCTTTGACACTTGCATGCTTGGAGAAATGCAGCAACGGTGGATTTGAAGAGGTTTTTATGACCAAAATTGACTTTGCTGTTAAATATGACCATTGCATTAGATTGAATTTGAGGGGACAAGTCGAGTTATATGCATCAGGCTTTTGTATGGATGATGAGTGTTGGAGACTATATGAGCAGAAAGTACATGGGATCTTAAGTCAAGGCCTGACTGATAGAGCAAAATTCATTCGTGTTTCCTGGAGGAACACGGAACCAGGATGCACTATTGAAAATGGATTATCAGTATTTGATACGCAGCCATTGCTTGTTGGAATTTCAATTAGCTCTGTGGAAAAAGCTTTTCGTGTGGTTGATATTGGTCCTAATGCTGATAACAAAGAAGATGCCCTAAAGTTTCGGAGATTTTGGGGTGAAAAGGCTGAGCTCAGGAGATTTAAAGATGGCAGAATTGCAGAAAGCACAGTTTGGGAAACTGATCAATGGACGAGACACCTCATTTTAAAGAGAATTGTGGAATATATTTTTGTTCGGCACCTTTCACCGATGTCAAAAGACCGCATTATGCATGCTGTGGATCAGATTGATTTCTCCCTGCTCCATGGTTCTGGAGATCCAATAACATTTTCTGGAAGTTTGCTTGCGGCTTTTGAAGTTTTATCAAAGCGATTACGTTCCATTGAAGACATTCCTTTAAAGGTGTCTACCGTACAGCCTTTAGACTCAGCTTTCAGGTATACATCTGTTTATCCTCCTGAACCTCACCCACTGGCAGAAGAAAAGACAAGTGATCTGCGAATTCAGCAAAAGCTTGCTCCATCCTGCATTCAGCCACTGGAAGTTATGATTCAGCTGGAAGGCTCTGGGAACTGGCCAACTGATGAGGTAGCAATTGAAAAAACCAAAACAGCCTTCCTTCTTAAAATTGGAGAGAGTCTGCAGAGTGTTTGGGGGATGACATGTATTGCTTCTGAAGATTCTGTTAATGTACTTGTCTCTGGTTATGCCTTCCACCTAAAAATTTGGCATGAAAAAGGCCTGAGTTTGGTGAATAAGGAATCTGGAAATGAATTATCAAATCGGATCTCCTCAACAGATAAGCAACTTTTTATTCAAAGTCAGCACTCCAACATGATTAGTGGATTACAGGCTCGTCACTCAATATATGGACCAGTTGTTAGGTTGGCAAAAAGATGGATAGCCTCACATTTCTTTTCAGCATGCTTGGTAGAGGAAGCAGTTGAACTGTTGGTAGCATCCATTTTCCTGAAGCCTCTACCCTTTCATGCCCCACTTTCTCGAATCACAGGTTTTTTAAGGTTCCTAAGATTACTGTCGGAATTTGATTGGACTTTTTCTCCATTGATTATTGACATAAACAATGATTTGGGTGCAAACGAGGAGAAAGAAATAGCTGACAAATTTAACATGACACGAAAAAATTTACAAGAAAATCCGCAAAGTGGAAGTCCTGCCATGTTCTTAGCAACAGCTTATGACAAGGCATCCGAGGCTTGGACCAGGTTCTCACCAAAATCATCGGAGTTAAAACGGTTGGTTGCTTATGCTAGAAGCAGCGCAGATTTGTTGACTAGACTAATATTACAGCATCAGGTCGACTCTTTTCTGTGGGAGTGCCTTTTCCGAACACCATTGAGCAACTACGATGCTGTTATTCTTCTCCATAGAGATAAATTACCATACCCACAACGCCTTCTCTTCCCATCTGAACTGAACCGAGGAGTTCATGTCGCAAAAGGGAATCCTAGCAAGATCTTCTCTCCATTCTTGTTGCCTAGAAACTTGAAAGCAAGTTCTGAGAACATCAAGGACAAGCTTTTTGTAAATTTTGATCCATTAAGGTGTTATATTGCGGATCTGCAGAAAGAATTCTCCAACACTTTCAACTTATGGTATGACTCTTTGGGAGGCGATGCAATTGGACTAACTTGGGGGCAACACAGTTCAAAGAAGCGTGGACGTGATGAAGGTGTTGAGGAGGAAAAAGAACCAGCTGAAGTGCTAAAATCTGTTGGTGAAACTGGTAAAGGTCTAATGAGGAGTGTCTACCTACTCAAGGCCCCAAGAGTCACGACTTAA 3174 40.49 MDSNTLLDPMEMKVGELLKEFQLDYSPDLVKLVEDTVSTIKKAIKLIPDDLKVTAAAAPGFIMDIGSDKVEFKFRKPKSIKIGGSYAFQGIAKPDVNVDLLVGLPKECFHEKDYLNYRYHAKRFLYLCTIKKYLNSSSMFSKVEWSTLQNEARKPVLIVHPALEELKVAPGFFVRIIPTIAASFFSISKLNLKRNNIHALNQGSLLAATPKYNTSILEDMYFEDTSEMVKKPFLESKSLLETLILLKVWARQRASIYVHDCLNGFLIAVILSYLITQNKINHSMTTIQMFRVAVKFIASSNLWNHGLYFKLGPQSTISKEEKKQYKDLFPVVICNPSSNFNIAFRISQSGFAELQDEAALTLACLEKCSNGGFEEVFMTKIDFAVKYDHCIRLNLRGQVELYASGFCMDDECWRLYEQKVHGILSQGLTDRAKFIRVSWRNTEPGCTIENGLSVFDTQPLLVGISISSVEKAFRVVDIGPNADNKEDALKFRRFWGEKAELRRFKDGRIAESTVWETDQWTRHLILKRIVEYIFVRHLSPMSKDRIMHAVDQIDFSLLHGSGDPITFSGSLLAAFEVLSKRLRSIEDIPLKVSTVQPLDSAFRYTSVYPPEPHPLAEEKTSDLRIQQKLAPSCIQPLEVMIQLEGSGNWPTDEVAIEKTKTAFLLKIGESLQSVWGMTCIASEDSVNVLVSGYAFHLKIWHEKGLSLVNKESGNELSNRISSTDKQLFIQSQHSNMISGLQARHSIYGPVVRLAKRWIASHFFSACLVEEAVELLVASIFLKPLPFHAPLSRITGFLRFLRLLSEFDWTFSPLIIDINNDLGANEEKEIADKFNMTRKNLQENPQSGSPAMFLATAYDKASEAWTRFSPKSSELKRLVAYARSSADLLTRLILQHQVDSFLWECLFRTPLSNYDAVILLHRDKLPYPQRLLFPSELNRGVHVAKGNPSKIFSPFLLPRNLKASSENIKDKLFVNFDPLRCYIADLQKEFSNTFNLWYDSLGGDAIGLTWGQHSSKKRGRDEGVEEEKEPAEVLKSVGETGKGLMRSVYLLKAPRVTT 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5911298 5921042 + CmaCh03G007480.1 Cma03g00748 290319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00748 1057 Pfam Nrap protein domain 6 910 1047 IPR035371 -
Cma03g00748 1057 Coils Coil 823 843 - -
Cma03g00748 1057 Pfam Nrap protein PAP/OAS-like domain 241 380 IPR035367 -
Cma03g00748 1057 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1049 IPR005554 -
Cma03g00748 1057 Pfam Nrap protein domain 1 98 230 IPR035082 -
Cma03g00748 1057 Pfam Nrap protein domain 3 384 538 IPR035368 -
Cma03g00748 1057 Pfam Nrap protein nucleotidyltransferase domain 4 568 741 IPR035369 -
Cma03g00748 1057 MobiDBLite consensus disorder prediction 1011 1031 - -
Cma03g00748 1057 Pfam Nrap protein PAP/OAS1-like domain 5 744 897 IPR035370 -
Cma03g00748 1057 MobiDBLite consensus disorder prediction 1013 1031 - -
Cma03g00748 1057 Gene3D - 217 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00748 K14544 UTP22, NOL6; U3 small nucleolar RNA-associated protein 22 - csv:101219567 1917.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g975 . . . . . . . . . . Cma03g00748 . Car03g00683 . . . Cpe10g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00776 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009270 1 3 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00748 Cma_Chr03 FPKM 9.69161 10.948899 12.117815 12.332926 18.305573 16.086037 19.286802 16.947748 14.988602 17.0536