Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00756 ATGGCGAATATGTGTGCCGATAGCGGCAATCTTATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCTACAAGAGCAGCAACAGCAGCAGCACCCACAGCAGTCGCCTCAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGACTGCCTCGAACCATTCTCTGTCCGGTGCGCCAGATTTGGGGTTTGGGCTCTCCGGAGCTGGATTTCCCGACCCGTTTCAGGTTCAGAGAGTAGTCGACGGTGGAGATACGAGCTTTCAGTTTCCCAACTTGGAGCACCATTCTTCTGCTTTCAGATTTACCGATTTCGACGGCGGCGCTGCGGCAGAGTTCGACTCCGATGAGTGGATGGACAGTCTAATAGTCGGTGGAGATTCAACGGAGAGCTCTAATCTTCCTTCTGGTTGCGAAGCGTGGCAGTCTAATTCGGATTTTGCTTTCTATGGTGCCGATCCCTTTATCCCCTGTCCCAGTCGCCTCACTATTCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGATCCTCCCAAAAGTCAAACCGCCGTTCAACCGCCGGTGGTCTCGTGGACGGGACTTACGTCGGCGACTCCACCGGCGGTCGTCAAGGACACTCAAGTTCCCAACCCTCCCCTTATTGTTCACAAGAGTGATGATAACGGCGGTTCGTCGAGTTCTGCAAAGACTGAATCGACTCCGCCGCTACTTAAAACCCTAATTGAATGTGCTCGACTCTCCGAATCGGAGCCAGATCGAGCGGCGCAAATGTTGATTCAGCTTAAGGAATCGTCATCGGAGCACGGAGATCCGACGGAGAGAGTCGCCTTTTACTTTCTCGAAGCTCTGTGCCGGAGATTGTCACTTCGATCGGAGAATTGTTTGGTTTCTTGCGAATCCACTTCCGATGATTTCACTCTCTCTTATAAAGCTCTGAACGACGCTTGCCCTTATTCTAAATTCGCACATTTGACGGCGAATCAAGCCATTCTCGAGATTACAGAGAACGCAAGCAGGATTCACATAATCGACTTTGGGATTTCACAGGGAGTTCAATGGGCGGCTCTTCTTCAAGCTCTCGCAACCCGCTCTACCGGAAAACCAACAGGAATTCGGATCTCCGGCATTCCGGCTCCGATGCTCGGGAACTGTCCGGCGACGGCGCTGTTCGCAACAGGTAACCGACTGGCCGAGTTCGCGAAGCTTCTGGAACTAAACTTCGAATTCGACCCAATTCTGACTCCGATCGAAGAACTGAACGAATCGTCGTTCCGAATCGAGTCGGATGAATCCCTGGCCGTGAATTTCATGCTTCAATTATACAACCTCCTCGACGAAACTCCTCGCGCCGTTCTCAACGTTTTGAAACTGGCAAAATCGCTGAACCCTAAAATCGTGACCCTCGGGGAATACGAAGCCAGTCTAAACCGGGTCGGGTTCTTCACCCGGTTCAATAACGCACTCAGATATTACTCTGCCATGTTCGAATCACTGGACCCAAAATTACCTCGCGACTCAAACGAGAGGCTGCAACTGGAAAAGCTCGTGCTCGGGCGGCGAATCGGCGGCGTGGTGGGACCGGAGTCGTCGTCGTCGACGGGGGCGGCGGCGGCGGCGGGGGGAGGCAAAACGGAACGAATGGAAGAGAAAGAAGAGTGGAAAATGTTAATGGAAAACAGCGGATTTGAAGCAGTAAATCTGAGCCATTACGCGAGAAGCCAAGCTAAAATCCTTTTATGGAAGTACGATTACAGCTCTGAGTATTGTCTGATGGAATCCTCAGCTGGGTTCCTGTCGTTGGCATGGAAGGATGTCCCGATCATTACAGTTTCTTCATGGCGTTGA 1860 51.94 MANMCADSGNLMAIAQQVMKQKQLQEQQQQQHPQQSPQQLTGPCTFGLNPWTASNHSLSGAPDLGFGLSGAGFPDPFQVQRVVDGGDTSFQFPNLEHHSSAFRFTDFDGGAAAEFDSDEWMDSLIVGGDSTESSNLPSGCEAWQSNSDFAFYGADPFIPCPSRLTIPCSSPSDLNRVIFPDPPKSQTAVQPPVVSWTGLTSATPPAVVKDTQVPNPPLIVHKSDDNGGSSSSAKTESTPPLLKTLIECARLSESEPDRAAQMLIQLKESSSEHGDPTERVAFYFLEALCRRLSLRSENCLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILEITENASRIHIIDFGISQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGNCPATALFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFRIESDESLAVNFMLQLYNLLDETPRAVLNVLKLAKSLNPKIVTLGEYEASLNRVGFFTRFNNALRYYSAMFESLDPKLPRDSNERLQLEKLVLGRRIGGVVGPESSSSTGAAAAAGGGKTERMEEKEEWKMLMENSGFEAVNLSHYARSQAKILLWKYDYSSEYCLMESSAGFLSLAWKDVPIITVSSWR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5947647 5949506 - CmaCh03G007560.1 Cma03g00756 290327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00756 619 MobiDBLite consensus disorder prediction 20 46 - -
Cma03g00756 619 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 242 618 - -
Cma03g00756 619 ProSiteProfiles GRAS family profile. 232 619 IPR005202 -
Cma03g00756 619 MobiDBLite consensus disorder prediction 531 550 - -
Cma03g00756 619 Pfam GRAS domain family 242 619 IPR005202 -
Cma03g00756 619 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 242 618 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00756 - - - cmos:111453531 1151.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00756 Cma16g00656 CCT
Cma03g00756 Cma07g00493 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00756 Cma-Chr3:5947647 Cma04g00784 Cma-Chr4:3996533 0 dispersed
Cma03g00756 Cma-Chr3:5947647 Cma07g00493 Cma-Chr7:2130556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00142 CST 77 758 GRAS Transcription Factor Family AT2G37650 53.7 5.8e-195 678.3
Cma06g00294 CST 76 757 GRAS Transcription Factor Family AT2G37650 53.2 4.9e-194 675.2
Cma08g00795 . 9 543 GRAS Transcription Factor Family AT3G13840 50.2 1.3e-132 470.7
Cma13g00118 . 216 674 GRAS Transcription Factor Family AT3G46600 51.8 1.4e-130 464.2
Cma01g00616 . 302 681 GRAS Transcription Factor Family AT3G46600 56.1 6.5e-125 445.3
Cma03g00933 . 25 440 GRAS Transcription Factor Family AT3G49950 61.1 2.7e-136 482.6
Cma04g00774 . 67 549 GRAS Transcription Factor Family AT4G36710 51.3 7.5e-125 444.9
Cma04g00614 . 18 438 GRAS Transcription Factor Family AT5G41920 66.0 2.0e-147 519.6
Cma07g01178 CST 445 839 GRAS Transcription Factor Family AT5G41920 56.3 5.7e-118 421.8
Cma03g00259 CST 436 828 GRAS Transcription Factor Family AT5G41920 55.3 2.2e-114 409.8
Cma04g00784 . 1 604 GRAS Transcription Factor Family AT5G66770 57.0 2.3e-173 606.3
Cma03g00756 CCT,CST 1 619 GRAS Transcription Factor Family AT5G66770 55.5 2.3e-173 606.3
Cma07g00493 CCT,CST 1 591 GRAS Transcription Factor Family AT5G66770 57.3 3.0e-173 605.9
Cma16g00656 CCT 1 590 GRAS Transcription Factor Family AT5G66770 57.4 3.5e-169 592.4
Cma02g00217 CST 57 536 GRAS Transcription Factor Family AT1G50600 59.2 2.4e-161 566.2
Cma20g00670 CST 50 538 GRAS Transcription Factor Family AT1G50600 58.2 7.0e-161 564.7
Cma16g00944 . 45 544 GRAS Transcription Factor Family AT1G50600 57.5 1.3e-159 560.5
Cma06g00659 CST 1 531 GRAS Transcription Factor Family AT1G50600 53.9 1.9e-158 556.6
Cma03g00582 . 111 549 GRAS Transcription Factor Family AT1G50600 57.0 8.9e-140 494.6
Cma09g00916 CST 116 576 GRAS Transcription Factor Family AT1G50600 54.7 2.7e-136 483.0
Cma07g00354 . 111 548 GRAS Transcription Factor Family AT1G50600 55.1 3.3e-134 476.1
Cma01g01159 CST 208 578 GRAS Transcription Factor Family AT1G50600 61.7 4.7e-133 472.2
Cma01g01007 . 195 576 GRAS Transcription Factor Family AT1G50600 51.0 9.6e-110 394.8
Cma04g02121 . 103 640 GRAS Transcription Factor Family AT1G14920 66.6 1.5e-203 706.4
Cma15g00959 . 44 574 GRAS Transcription Factor Family AT1G14920 66.7 6.4e-202 701.0
Cma15g00743 . 50 595 GRAS Transcription Factor Family AT1G14920 61.7 4.3e-182 635.2
Cma04g02293 . 49 603 GRAS Transcription Factor Family AT1G14920 59.8 8.4e-178 620.9
Cma01g00377 . 27 535 GRAS Transcription Factor Family AT1G14920 56.0 8.7e-151 531.2
Cma14g00820 . 28 533 GRAS Transcription Factor Family AT1G14920 52.7 2.1e-144 510.0
Cma06g00717 . 29 394 GRAS Transcription Factor Family AT1G55580 53.2 4.9e-107 385.6
Cma04g02293 . 46 604 GRAS Transcription Factor Family AT1G66350 59.4 4.3e-179 625.2
Cma15g00743 . 50 592 GRAS Transcription Factor Family AT1G66350 61.0 7.5e-176 614.4
Cma04g02121 . 103 638 GRAS Transcription Factor Family AT1G66350 58.3 1.8e-169 593.2
Cma15g00959 . 44 570 GRAS Transcription Factor Family AT1G66350 58.9 5.8e-168 588.2
Cma01g00377 . 1 535 GRAS Transcription Factor Family AT1G66350 55.9 7.3e-155 544.7
Cma14g00820 . 1 533 GRAS Transcription Factor Family AT1G66350 53.8 2.4e-150 529.6
Cma02g00217 CST 19 536 GRAS Transcription Factor Family AT5G48150 65.5 2.7e-191 665.6
Cma20g00670 CST 19 538 GRAS Transcription Factor Family AT5G48150 64.6 6.7e-190 661.0
Cma16g00944 . 17 544 GRAS Transcription Factor Family AT5G48150 58.6 6.7e-174 607.8
Cma06g00659 CST 17 531 GRAS Transcription Factor Family AT5G48150 59.8 2.2e-172 602.8
Cma03g00582 . 16 549 GRAS Transcription Factor Family AT5G48150 51.9 8.3e-148 521.2
Cma07g00354 . 16 548 GRAS Transcription Factor Family AT5G48150 51.8 1.3e-145 513.8
Cma01g01159 CST 119 578 GRAS Transcription Factor Family AT5G48150 53.8 5.6e-136 481.9
Cma09g00916 CST 206 577 GRAS Transcription Factor Family AT5G48150 62.2 1.1e-134 477.6
Cma04g02121 . 105 637 GRAS Transcription Factor Family AT2G01570 68.3 3.1e-210 728.8
Cma15g00959 . 46 570 GRAS Transcription Factor Family AT2G01570 68.6 1.6e-206 716.5
Cma15g00743 . 51 593 GRAS Transcription Factor Family AT2G01570 62.1 5.0e-184 641.7
Cma04g02293 . 53 600 GRAS Transcription Factor Family AT2G01570 61.0 8.9e-181 630.9
Cma01g00377 . 26 535 GRAS Transcription Factor Family AT2G01570 56.5 2.7e-153 539.7
Cma14g00820 . 27 537 GRAS Transcription Factor Family AT2G01570 51.6 1.9e-146 516.9
Cma04g02293 . 46 604 GRAS Transcription Factor Family AT1G66350 59.4 4.3e-179 625.2
Cma15g00743 . 50 592 GRAS Transcription Factor Family AT1G66350 61.0 7.5e-176 614.4
Cma04g02121 . 103 638 GRAS Transcription Factor Family AT1G66350 58.3 1.8e-169 593.2
Cma15g00959 . 44 570 GRAS Transcription Factor Family AT1G66350 58.9 5.8e-168 588.2
Cma01g00377 . 1 535 GRAS Transcription Factor Family AT1G66350 55.9 7.3e-155 544.7
Cma14g00820 . 1 533 GRAS Transcription Factor Family AT1G66350 53.8 2.4e-150 529.6
Cma15g00743 . 51 593 GRAS Transcription Factor Family AT3G03450 61.4 4.7e-176 615.1
Cma04g02293 . 53 600 GRAS Transcription Factor Family AT3G03450 59.9 9.8e-174 607.4
Cma15g00959 . 46 570 GRAS Transcription Factor Family AT3G03450 61.8 5.4e-172 601.7
Cma04g02121 . 105 637 GRAS Transcription Factor Family AT3G03450 59.6 3.6e-168 589.0
Cma14g00820 . 27 533 GRAS Transcription Factor Family AT3G03450 56.0 8.6e-154 541.2
Cma01g00377 . 26 535 GRAS Transcription Factor Family AT3G03450 57.4 1.4e-151 533.9
Cma04g02293 . 40 603 GRAS Transcription Factor Family AT5G17490 55.8 4.5e-160 562.0
Cma15g00743 . 50 595 GRAS Transcription Factor Family AT5G17490 55.3 2.0e-155 546.6
Cma04g02121 . 101 637 GRAS Transcription Factor Family AT5G17490 55.9 6.3e-154 541.6
Cma15g00959 . 42 570 GRAS Transcription Factor Family AT5G17490 57.5 1.8e-153 540.0
Cma01g00377 . 23 540 GRAS Transcription Factor Family AT5G17490 54.0 3.0e-140 496.1
Cma14g00820 . 23 531 GRAS Transcription Factor Family AT5G17490 51.4 1.2e-133 474.2
Cma01g01007 . 1 576 GRAS Transcription Factor Family AT1G21450 58.0 8.7e-176 614.4
Cma09g01087 . 15 567 GRAS Transcription Factor Family AT1G21450 55.1 1.3e-166 583.9
Cma06g00659 CST 155 531 GRAS Transcription Factor Family AT1G21450 52.9 5.0e-115 412.5
Cma16g00944 . 168 544 GRAS Transcription Factor Family AT1G21450 51.9 2.8e-113 406.8
Cma01g01159 CST 210 578 GRAS Transcription Factor Family AT1G21450 50.5 3.3e-106 383.3
Cma01g00616 . 310 681 GRAS Transcription Factor Family AT5G59450 55.9 1.3e-126 451.1
Cma03g00582 . 32 549 GRAS Transcription Factor Family AT4G17230 61.4 1.6e-173 606.7
Cma07g00354 . 1 548 GRAS Transcription Factor Family AT4G17230 57.6 6.2e-173 604.7
Cma02g00217 CST 26 536 GRAS Transcription Factor Family AT4G17230 50.6 3.6e-141 499.2
Cma16g00944 . 49 544 GRAS Transcription Factor Family AT4G17230 51.7 1.3e-133 474.2
Cma06g00659 CST 45 531 GRAS Transcription Factor Family AT4G17230 51.2 2.4e-132 469.9
Cma01g01159 CST 204 578 GRAS Transcription Factor Family AT4G17230 53.3 1.2e-112 404.4
Cma02g00217 CST 125 536 GRAS Transcription Factor Family AT2G04890 66.3 4.7e-160 561.6
Cma20g00670 CST 127 538 GRAS Transcription Factor Family AT2G04890 65.6 2.3e-159 559.3
Cma06g00659 CST 135 531 GRAS Transcription Factor Family AT2G04890 60.4 2.1e-144 509.6
Cma16g00944 . 148 544 GRAS Transcription Factor Family AT2G04890 59.9 1.4e-143 506.9
Cma09g00916 CST 200 577 GRAS Transcription Factor Family AT2G04890 57.7 1.7e-125 446.8
Cma01g01159 CST 208 578 GRAS Transcription Factor Family AT2G04890 59.3 3.7e-125 445.7
Cma03g00582 . 169 549 GRAS Transcription Factor Family AT2G04890 59.3 1.1e-124 444.1
Cma07g00354 . 170 548 GRAS Transcription Factor Family AT2G04890 57.3 2.8e-120 429.5
Cma01g01007 . 200 576 GRAS Transcription Factor Family AT2G04890 50.1 1.7e-106 383.6
Cma11g00865 . 1 471 GRAS Transcription Factor Family AT1G50420 66.3 2.3e-174 609.4
Cma18g00879 . 6 461 GRAS Transcription Factor Family AT1G50420 62.3 1.6e-156 550.1
Cma10g00910 . 3 424 GRAS Transcription Factor Family AT1G50420 61.8 5.3e-147 518.5
Cma06g00779 CCT,CST 408 771 GRAS Transcription Factor Family AT4G00150 55.7 8.4e-104 375.2
Cma16g01144 CST 365 727 GRAS Transcription Factor Family AT4G00150 54.3 1.3e-101 367.9
Cma07g00493 CCT,CST 1 591 GRAS Transcription Factor Family AT3G50650 50.5 1.4e-148 523.9
Cma16g00656 CCT 1 590 GRAS Transcription Factor Family AT3G50650 52.1 7.8e-147 518.1
Cma07g01178 CST 185 837 GRAS Transcription Factor Family AT3G54220 60.4 5.8e-205 711.4
Cma03g00259 CST 175 826 GRAS Transcription Factor Family AT3G54220 61.0 1.7e-204 709.9
Cma04g00614 . 68 436 GRAS Transcription Factor Family AT3G54220 64.5 9.7e-136 481.5
Cma03g00918 . 84 484 GRAS Transcription Factor Family AT4G37650 66.1 1.2e-155 547.4
Cma07g00650 . 92 492 GRAS Transcription Factor Family AT4G37650 65.4 5.8e-155 545.0
Cma02g00539 . 101 476 GRAS Transcription Factor Family AT4G37650 57.3 1.6e-125 447.2
Cma08g00189 . 60 452 GRAS Transcription Factor Family AT4G37650 51.2 1.2e-112 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34640 PF03514 GRAS 9.30E-108 CL0063 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00756 Cma_Chr03 FPKM 19.867205 20.883926 21.508656 22.073483 9.853909 7.775173 8.765602 12.594649 10.496181 11.635332