Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00761 ATGGTGGCATCAATGGCCGGCACCACCGACAATGGTTGGCGGAGAGCTGGAGGCGACCCATCCACTTGCGGTGGTTGTTTGGTGGCTGACAATGGAACGGCAGCAGGCTCTTCTTTCTCTTTTCCTTCGCCTCCCTTCTTCTTCATATATCGCTCTGCTACAACCCTCGTCGGCACGCGCTCTCCACCCATCGTTATTGTTTGTTTTCTTTCTTCTTTTTCTATCTTCCTCTCTGCTGAACCGCCCCGGCACGCCGTCCTCTGTTTTGCTGCAACCGCACGACTGCCCGCCGCCTTCTTCTACAACTGCTCATCGTTGAGGAGTATAACTATGGCTGGAGAAGCAGGATTGTTTGCTGTTCAACAGACCATTGGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATGGCACCAAATGCTGCCAATATGTGCGTCAAATGCTTGTGTTCTGAAGTTGATATCACAGAAGGTCTACAGAAGCAATTGACTATTATGCATTGTCCAGATTGCGAGAGTTACTTGCAGCCACCCCGAACTTGGCTTAAAGCGCAATTAGAATCGAAGGAACTACTGACATTCTGTATCAAAAGGTTAAAAAATTTGAATAAGGTTAAACTGGTACATGCTGAATTTGTTTGGACTGAACCCCATTCCAAGAGGATCAAGGTCAAGCTGAAGGTTCAGAAAGAGGTCCTACATGGGGCAATTTTGGAACAGTCCTATGTCGCGGAGTATGTTGTACAGGATCACTTGTGCGAGTCTTGTGCAAGGGTCCAGGCCAACCCTGACCAGTGGGTAGCTTCTGTTCAACTCAGGCAGCACGTCCCTCACCGCCGTACATTTTTCTTCTTGGAGCAACTGATACTGAAGCATGGTGCTGCTGCCAATGCCATAAGGATCAAACAGATGGATGAAGGTATTGACTTTTTCTTTTCTAATAGGAGTCATGCTGTAAAGTTTGTGGAATTTATTGGAAAGGTTGCTCCAATCAGGAGCCGCAGCGATAAACAACTCGTTTCTCATGATTCTAAGAGTAACGTTCACAACTATAAGCACACTTTCTCCGTTGAAATATCGCCAATATGCCGTGAGGATTTGATATGCTTGCCTCCTAAAGTTGCTGTTAGTTTGGGCAATCTTGGTCCTCTCGTAATTTGCACCAAAGTTACAAATGCGATTGCTTTACTTGATCCATTCACATTAAGGTACTGCTTCTTGGATGCTGATCAGTATTGGAGGACATCCTTTAGGTCTTTACTCACAAGCAGGCAGCTTGTGGAATATGTTGTACTAGATATTGAGAATGTTTCTACTGAAGTCAATGTTGCTGGTTCTAAGTATATGTTGGCCTATGCTCAAGTAGCTCGCGTATCAGATTTTGGAAGGAACGACACGATATTCTCCATAAGAACCCATCTTGGTCATATTTTGAACCCTGGGGATTATGCCCTTGGTTATGATCTTTATGCAGCCAATAGTAATGATATGGAGATAGAAAAATACAAGGGTCTCGAACTTCCGGAGGCGATTTTAATCAAGAAGAGTTATGAAGAAAAGCGCCAGAGGAAGCGTGGAAAGCCTCGAGCATGGAAGCTTAAATCGCTTGAGATGGATGTTGATGATAGAGGTAGAGCAGAGGAAGATAAGAAAAACTCGGAGTATGAACAGTTTTTGAGAGACTTAGAGGAGAATCCAGATTTGAGGTTCAACATATCATTGTACCGAAATAGAGAATATCAACCATCTGAAATGACTGATGGGGAAGATGGACCTTCAGTACCACTAGAAGAGTTGCTTGCTGATCTTGATTTAGATGAAGGAGATGGAGACGGAGACGATGGCATGGACGATGTTCGTAACGGGTTATTGCTTGTAATTTTCATTCATACGGCATCTGATTTTTTTAAGGGATCATATGGTATGGCCGATTGTTTGAAACTGAGAAAAGCTATTGGAGTTGCTGAATTTTCTGAACCGACGTCGTATTGCGTCGTGGGAAAAGGCGAGGGCATAATTTCTCAGTATTTCTTAAAATCGATTCTGCGGCAGTGGTTCGAAGATTTTGATTTCTCTTATTTCTTCTTATTGTCGTTGATCGATATGAAGGACGACGATGTCCTTCCAACGACGATAGCGAGTGCCGGGAAGAAAGATAGCTCGGTTTCGAGTATATTCGGCAAAGGACGCTACAAGTTCTGGGCCTTGACTGCCATTTTGTTGCTCGCATTTTGGTCCATGTTCACCGGCACCGTCTCTCTTCGATGGTCCGCCGGTAATCTCAACGGTCTATCTGATGATATCGATTTTAACCTCCCTAATGATCTCGATGTGCTTGTTAGTATCTCTCTCTCTGAAATGGAGGAAAGGGAGAAGATAGTGAAACACATGTGGGACGTTTACACAAATAATCGCCGGATCAGGTTACCGCGTTTCTGGCAAGAGGCATTCGAGGCTGCGTACGAGGACCTGACCAGTGAAATGCCTGGTGATAGAGAGGCTGCTATCTCCGAGATCGCCCGGATGTCTATGCACTCCATTGTTCTTGATACGCCTTCGGAGCAATCCACGGTTGGTTATTTACTCTCTGATACATACGTTTTAATAGCCCCTGATGATCTTATGTTCGTAGCACACGAAAAGGATTTCATGTTAGTTTTGAGTACACTCTTCGTGTATGTGGATGGGGGTTCAGTTTCGGTTGCGATTGCATATTTGCAGTTGACTATGATTCTCATTGAACTCAGTGCACGAGAGTTCACAAAGATGCAGAAAATAGCAGATAAAAGCAGGGGGACAGCTATCAAAACTGGGAGTAAGCTGTGA 2823 44.6 MVASMAGTTDNGWRRAGGDPSTCGGCLVADNGTAAGSSFSFPSPPFFFIYRSATTLVGTRSPPIVIVCFLSSFSIFLSAEPPRHAVLCFAATARLPAAFFYNCSSLRSITMAGEAGLFAVQQTIGSVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDCESYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKEVLHGAILEQSYVAEYVVQDHLCESCARVQANPDQWVASVQLRQHVPHRRTFFFLEQLILKHGAAANAIRIKQMDEGIDFFFSNRSHAVKFVEFIGKVAPIRSRSDKQLVSHDSKSNVHNYKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRYCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTIFSIRTHLGHILNPGDYALGYDLYAANSNDMEIEKYKGLELPEAILIKKSYEEKRQRKRGKPRAWKLKSLEMDVDDRGRAEEDKKNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEMTDGEDGPSVPLEELLADLDLDEGDGDGDDGMDDVRNGLLLVIFIHTASDFFKGSYGMADCLKLRKAIGVAEFSEPTSYCVVGKGEGIISQYFLKSILRQWFEDFDFSYFFLLSLIDMKDDDVLPTTIASAGKKDSSVSSIFGKGRYKFWALTAILLLAFWSMFTGTVSLRWSAGNLNGLSDDIDFNLPNDLDVLVSISLSEMEEREKIVKHMWDVYTNNRRIRLPRFWQEAFEAAYEDLTSEMPGDREAAISEIARMSMHSIVLDTPSEQSTVGYLLSDTYVLIAPDDLMFVAHEKDFMLVLSTLFVYVDGGSVSVAIAYLQLTMILIELSAREFTKMQKIADKSRGTAIKTGSKL 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5963667 5971230 - CmaCh03G007610.1 Cma03g00761 290332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00761 940 Pfam NMD3 family 129 358 IPR007064 -
Cma03g00761 940 PANTHER 60S RIBOSOMAL EXPORT PROTEIN NMD3 111 610 - -
Cma03g00761 940 MobiDBLite consensus disorder prediction 1 20 - -
Cma03g00761 940 Coils Coil 544 564 - -
Cma03g00761 940 Pfam Protein of unknown function (DUF1195) 711 851 IPR010608 -
Cma03g00761 940 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 111 610 IPR039768 GO:0043023
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00761 K07562 NMD3; 60S ribosomal export protein NMD3 - csv:101217835 924.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00761 Cma07g00495 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00761 Cma-Chr3:5963667 Cma07g00495 Cma-Chr7:2135581 2.47E-72 dispersed
Cma03g00761 Cma-Chr3:5963667 Cma05g00231 Cma-Chr5:984273 1.28E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g948 Blo04g00922 . . . . . Bma09g00072 . . . Cma03g00761 Cma07g00495 Car03g00695 Car07g00435 Sed14g1107 Cpe19g00805 Cpe10g00602 Bhi03g01282 Tan03g1968 Cmetu08g1737 . Hepe04g1499 . . Cla01g01896 . . . . . . Cone8ag0801 Cone12ag0751 Cone6ag1612 . Lsi01g00686 . . Cme08g00837 Blo05g00790 . . . . Bpe06g00049 . . . Cmo03g00789 Cmo07g00497 . . . . . . . . . . . . . . . . . . . . . Csa06g03229 Chy02g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002854 1 3 2 2 1 2 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 2 1 1 2 1 3 2 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00761 Cma_Chr03 FPKM 11.788321 11.810078 13.04127 14.642914 10.329579 10.415505 9.798618 12.104124 12.596178 12.900501