Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00762 ATGCCGGCCGATTTAGAGAATTCCTCGTCGGCTTCCGGCGAACCCACTGAATCCTCCCCCGGAAACGTCGCTCCGACCCCCAAACCCGCCGCTAAGAAAAAACGAAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCACGACCCCTCTAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGAACTAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGAAGGGACAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAATGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCTGTTTCTGATTCTCAGAAAGCGGTGGAGTCTAGTCCGAAGCCATCTCCGCCACCGGAACGGTCACCTCCGCCGTCAACTTGTGTTCTGTCTCCTGTCTTGCCGATTCAGAGTGAGAATCGACCCGAAGAAGCACCAGTGGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAGCAGCAAGAGCTCGAACAGCAACAACAGTTCGAGTAGCCAGTTTGCTAGCTTGTTTGCTTCCACAACTACATCAATGAGCCTGCAACCTCCTCGACCCCCGACATTTACAGACTTGATACATACTATGGCTTGTTCGGATCACTTGACCGATTATGCACCAACGACGACTATTGAACCTATTTCCCTATGTCTTTCAACTAGCCATGGGGCATCAGTTTTTGGGGCTGCCAGCCAAGAGCTCCGGCAGTACACACCAAGTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAATGCCTCATTGCTTCGCGGGTTGGGATTGGGGTTAGTACCGTCCACCACTTCAGCTGCTGCGTCCCAAGAGAGGTTGCCATGGAATCAGCAGAGGCAAATTGAAGCAGATGGCATCTCGATCAGTGCAGGGCTCGGACTGGGACTCCCTTGTGATGGCAATTCTGGATTGAAGGAACTAATGAGGAGCAGCAACCATTCGATATTTGCTCCAAAACATACTACCCTGGACTTCCTCGGACTGGGGATGGCAGCAGCTGGTGGCAGCCCCAACAGCAGCCTGGCGGCGCTGATTGGCGGGAGTATGGGATCATACGGAGGGGGTGACAAATCCAGCAAAGACATGAACACAAACAATTAA 1473 51.32 MPADLENSSSASGEPTESSPGNVAPTPKPAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEENAKAQPQSLVDKPVSDSQKAVESSPKPSPPPERSPPPSTCVLSPVLPIQSENRPEEAPVATTGMSGSCSSSSSKSSNSNNSSSSQFASLFASTTTSMSLQPPRPPTFTDLIHTMACSDHLTDYAPTTTIEPISLCLSTSHGASVFGAASQELRQYTPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLGLVPSTTSAAASQERLPWNQQRQIEADGISISAGLGLGLPCDGNSGLKELMRSSNHSIFAPKHTTLDFLGLGMAAAGGSPNSSLAALIGGSMGSYGGGDKSSKDMNTNN 490
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5974951 5976945 + CmaCh03G007620.1 Cma03g00762 290333
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00762 490 MobiDBLite consensus disorder prediction 199 214 - -
Cma03g00762 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cma03g00762 490 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cma03g00762 490 SMART c2h2final6 102 132 IPR013087 -
Cma03g00762 490 SMART c2h2final6 61 83 IPR013087 -
Cma03g00762 490 SMART c2h2final6 137 157 IPR013087 -
Cma03g00762 490 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cma03g00762 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 235 - -
Cma03g00762 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 250 480 - -
Cma03g00762 490 MobiDBLite consensus disorder prediction 1 23 - -
Cma03g00762 490 MobiDBLite consensus disorder prediction 1 45 - -
Cma03g00762 490 MobiDBLite consensus disorder prediction 195 275 - -
Cma03g00762 490 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 250 480 - -
Cma03g00762 490 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 235 - -
Cma03g00762 490 MobiDBLite consensus disorder prediction 253 275 - -
Cma03g00762 490 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cma03g00762 490 MobiDBLite consensus disorder prediction 215 233 - -
Cma03g00762 490 Gene3D Classic Zinc Finger 41 111 - -
Cma03g00762 490 Gene3D Classic Zinc Finger 115 195 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma03g00762 Cma16g00651 CCT
Cma03g00762 Cma16g00651 ECH
Cma03g00762 Cma07g00501 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00059 Cma-Chr1:264054 Cma03g00762 Cma-Chr3:5974951 3.45E-114 dispersed
Cma03g00762 Cma-Chr3:5974951 Cma07g00501 Cma-Chr7:2157354 0 dispersed
Cma06g00370 Cma-Chr6:1719002 Cma03g00762 Cma-Chr3:5974951 8.46E-115 dispersed
Cma07g00934 Cma-Chr7:4486189 Cma03g00762 Cma-Chr3:5974951 3.62E-113 dispersed
Cma08g00323 Cma-Chr8:1849759 Cma03g00762 Cma-Chr3:5974951 5.36E-111 dispersed
Cma08g00775 Cma-Chr8:4677786 Cma03g00762 Cma-Chr3:5974951 3.11E-111 dispersed
Cma14g01261 Cma-Chr14:9995680 Cma03g00762 Cma-Chr3:5974951 2.43E-114 dispersed
Cma17g00719 Cma-Chr17:5913485 Cma03g00762 Cma-Chr3:5974951 2.01E-114 dispersed
Cma20g00577 Cma-Chr20:2758301 Cma03g00762 Cma-Chr3:5974951 1.47E-109 dispersed
Cma03g00762 Cma-Chr3:5974951 Cma03g00765 Cma-Chr3:5980960 0 proximal
Cma01g01894 Cma-Chr1:12396752 Cma03g00762 Cma-Chr3:5974951 8.01E-140 wgd
Cma03g00762 Cma-Chr3:5974951 Cma07g00499 Cma-Chr7:2152878 0 wgd
Cma03g00762 Cma-Chr3:5974951 Cma09g00169 Cma-Chr9:719687 1.23E-135 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34641 PF00096 zf-C2H2 0.0049 CL0361 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00762 K25869 - csv:101217597 707.597