Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00762 | ATGCCGGCCGATTTAGAGAATTCCTCGTCGGCTTCCGGCGAACCCACTGAATCCTCCCCCGGAAACGTCGCTCCGACCCCCAAACCCGCCGCTAAGAAAAAACGAAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCACGACCCCTCTAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGAACTAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGAAGGGACAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAATGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCTGTTTCTGATTCTCAGAAAGCGGTGGAGTCTAGTCCGAAGCCATCTCCGCCACCGGAACGGTCACCTCCGCCGTCAACTTGTGTTCTGTCTCCTGTCTTGCCGATTCAGAGTGAGAATCGACCCGAAGAAGCACCAGTGGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAGCAGCAAGAGCTCGAACAGCAACAACAGTTCGAGTAGCCAGTTTGCTAGCTTGTTTGCTTCCACAACTACATCAATGAGCCTGCAACCTCCTCGACCCCCGACATTTACAGACTTGATACATACTATGGCTTGTTCGGATCACTTGACCGATTATGCACCAACGACGACTATTGAACCTATTTCCCTATGTCTTTCAACTAGCCATGGGGCATCAGTTTTTGGGGCTGCCAGCCAAGAGCTCCGGCAGTACACACCAAGTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAATGCCTCATTGCTTCGCGGGTTGGGATTGGGGTTAGTACCGTCCACCACTTCAGCTGCTGCGTCCCAAGAGAGGTTGCCATGGAATCAGCAGAGGCAAATTGAAGCAGATGGCATCTCGATCAGTGCAGGGCTCGGACTGGGACTCCCTTGTGATGGCAATTCTGGATTGAAGGAACTAATGAGGAGCAGCAACCATTCGATATTTGCTCCAAAACATACTACCCTGGACTTCCTCGGACTGGGGATGGCAGCAGCTGGTGGCAGCCCCAACAGCAGCCTGGCGGCGCTGATTGGCGGGAGTATGGGATCATACGGAGGGGGTGACAAATCCAGCAAAGACATGAACACAAACAATTAA | 1473 | 51.32 | MPADLENSSSASGEPTESSPGNVAPTPKPAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEENAKAQPQSLVDKPVSDSQKAVESSPKPSPPPERSPPPSTCVLSPVLPIQSENRPEEAPVATTGMSGSCSSSSSKSSNSNNSSSSQFASLFASTTTSMSLQPPRPPTFTDLIHTMACSDHLTDYAPTTTIEPISLCLSTSHGASVFGAASQELRQYTPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLGLVPSTTSAAASQERLPWNQQRQIEADGISISAGLGLGLPCDGNSGLKELMRSSNHSIFAPKHTTLDFLGLGMAAAGGSPNSSLAALIGGSMGSYGGGDKSSKDMNTNN | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5974951 | 5976945 | + | CmaCh03G007620.1 | Cma03g00762 | 290333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
| Cma03g00762 | 490 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
| Cma03g00762 | 490 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
| Cma03g00762 | 490 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
| Cma03g00762 | 490 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
| Cma03g00762 | 490 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
| Cma03g00762 | 490 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
| Cma03g00762 | 490 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 235 | - | - | |
| Cma03g00762 | 490 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 250 | 480 | - | - | |
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 195 | 275 | - | - | |
| Cma03g00762 | 490 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 250 | 480 | - | - | |
| Cma03g00762 | 490 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 1 | 235 | - | - | |
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 253 | 275 | - | - | |
| Cma03g00762 | 490 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
| Cma03g00762 | 490 | MobiDBLite | consensus disorder prediction | 215 | 233 | - | - | |
| Cma03g00762 | 490 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
| Cma03g00762 | 490 | Gene3D | Classic Zinc Finger | 115 | 195 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00762 | Cma16g00651 | CCT | |
| Cma03g00762 | Cma16g00651 | ECH | |
| Cma03g00762 | Cma07g00501 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00059 | Cma-Chr1:264054 | Cma03g00762 | Cma-Chr3:5974951 | 3.45E-114 | dispersed | |
| Cma03g00762 | Cma-Chr3:5974951 | Cma07g00501 | Cma-Chr7:2157354 | 0 | dispersed | |
| Cma06g00370 | Cma-Chr6:1719002 | Cma03g00762 | Cma-Chr3:5974951 | 8.46E-115 | dispersed | |
| Cma07g00934 | Cma-Chr7:4486189 | Cma03g00762 | Cma-Chr3:5974951 | 3.62E-113 | dispersed | |
| Cma08g00323 | Cma-Chr8:1849759 | Cma03g00762 | Cma-Chr3:5974951 | 5.36E-111 | dispersed | |
| Cma08g00775 | Cma-Chr8:4677786 | Cma03g00762 | Cma-Chr3:5974951 | 3.11E-111 | dispersed | |
| Cma14g01261 | Cma-Chr14:9995680 | Cma03g00762 | Cma-Chr3:5974951 | 2.43E-114 | dispersed | |
| Cma17g00719 | Cma-Chr17:5913485 | Cma03g00762 | Cma-Chr3:5974951 | 2.01E-114 | dispersed | |
| Cma20g00577 | Cma-Chr20:2758301 | Cma03g00762 | Cma-Chr3:5974951 | 1.47E-109 | dispersed | |
| Cma03g00762 | Cma-Chr3:5974951 | Cma03g00765 | Cma-Chr3:5980960 | 0 | proximal | |
| Cma01g01894 | Cma-Chr1:12396752 | Cma03g00762 | Cma-Chr3:5974951 | 8.01E-140 | wgd | |
| Cma03g00762 | Cma-Chr3:5974951 | Cma07g00499 | Cma-Chr7:2152878 | 0 | wgd | |
| Cma03g00762 | Cma-Chr3:5974951 | Cma09g00169 | Cma-Chr9:719687 | 1.23E-135 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34641 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00762 | K25869 | - | csv:101217597 | 707.597 |