Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00763 ATGAAGAAATCCACTGCAATTTCAGGATCGCCATTTTCACTTTCTTTTCTGTTCACTGTCTTCTTCCTTTTCCTTTCTTTACCTTCGAATGCAGATGATAAATGGTGGGAAGCGGCCTGTCCTGTGAAGAGAGCTAATGAGAGAAAATCACTCCTCAAAACAGAGTACGGCGAGATCTCTGCCGTTGATTTACACGATGCTTCTCAATTCGGACCTTACCATCTTCAGTTCATTACAATGGAACCCAACTCCCTGTTTCTCCCTGTTCTTCTTCATGCGGACATGGTGTTGTACATGCACACTGGAAGTGGGAGGTTGAATTGGTTTGATGATGATGATTTGAGGGAGGTGGATTTACGGCGGGGAGATATTTTCAGGCTTCAACCAGGCGCCATTTTTTACATTCATAGCAGCTTAGAGACCGAACGTGAAAAGCTTCGGATGTATGCTCTGTTTTCCAGCACAGATGAGGACCCATTTGAGCCGGCTATCGGAGCGTACTCCCGTGTCACCGATCATGTTCGTGGATTCGACAAAGAAATCCTCTGTAAAGCTTTCATGGTCCCGGAGGAAGTAATAGAGGAAATAATGGACGCGAAGAGGCCGCCGCTGATTGTCCACGCTGCGACCACTTTGAGCACTTTGAGCAAGAAGCAGAGGTCGTCATTGTCGATGTCGTTGGAATTAGAAGCTCGATTCTTAAAATCTTTCATAGGGGGAGGCGGGATTGGGATGGATTTCAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTTGTACAACGTTTTTGAAGCGGACCCAGATTTTGAAAACTGTAATGGGTGGAGTTTGACTGTAACTAAGAAAGTCTCCCATCAGTTGAAGGGCTCCAACATTGGCTTCTTCGTAGTCAACCTCACAGCGGGCTCAATGATGGGTCCGCATTGGAATCCAAGGGCGTGGGAGATTGGGATTGTGACATCAGAGGAGGCAGGGGTGGTTCGGGTGGGGTGTTCGAGCATGACGAACAGTTCAAAATGCAAGAAATGGAGTTTTGTAGTTGGTAAAGGTGATGTGTTCGTGGTGCCAAGGTTCCATCCAATGGCGCAGATGTCGTTCAACAATGGGTCGTTTGCTTTTGTGGGATTTAGCACGACGAACAGGAATAACCTGCCACAGTTCTTGGCTGGACGTAGCTCGGTGTTACAAACTGTGGAGAGGCAAGTGTTGGCGTGGTCGTTTGATGTGAATGTGACGACGATTGATCGGTTGTTGGAAGCTAGAGTTGAGTCAGTCATATTGGAGTGTACTTCTTGTGCTGAAGAGGAAGTGATGAAAATGGAGGAGGAAGCTGAGAGAGAGAGACAAGAGGAGGAGGAGAGGAGAAGGGAAGAGGAAGAACGGGAGAGGGAAGAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAACGGGAGAGGGAAGAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAACGGGAGAGGGAAGAGGAGGAGGAGAGGAGAAGGGAGGAGGAAGAAAGGGAGAGAGAAGAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAGGCAAGAAAGAGAGAAGAGGAAGAAAGGGAGAGAGAAGAGGAGGAGGCAAGAAAAAGGGAAGAGGAAGAAAGGGAGAGGGAAGAGGAGGAGGCAAGAAAAAGGGAAAAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAACGGGAGAGGGAAGAGGAGGCGGAGAGGGAGCGAAGGGAAGAGGAGGAGGAGGCAAGAAGAAGGGAAGAGGCGGAGAGGGGAGAAAGGGAGGCAGAGAGAGAGGCAGAGGAAGCTAGGGAGAGTGAGGAAGCACACCGAAGAGAGAGAGGTAGGAGACGCAGAGAGGCGGAGAGAGAGGCAGAAGAAAGACAGGGAAGACGCAGGGAGGAAGAAGAAGAGCCAACACTAAGAATTCTGNGACAACGAACGTAA 1947 49.46 MKKSTAISGSPFSLSFLFTVFFLFLSLPSNADDKWWEAACPVKRANERKSLLKTEYGEISAVDLHDASQFGPYHLQFITMEPNSLFLPVLLHADMVLYMHTGSGRLNWFDDDDLREVDLRRGDIFRLQPGAIFYIHSSLETEREKLRMYALFSSTDEDPFEPAIGAYSRVTDHVRGFDKEILCKAFMVPEEVIEEIMDAKRPPLIVHAATTLSTLSKKQRSSLSMSLELEARFLKSFIGGGGIGMDFKKKKKKKKKGLYNVFEADPDFENCNGWSLTVTKKVSHQLKGSNIGFFVVNLTAGSMMGPHWNPRAWEIGIVTSEEAGVVRVGCSSMTNSSKCKKWSFVVGKGDVFVVPRFHPMAQMSFNNGSFAFVGFSTTNRNNLPQFLAGRSSVLQTVERQVLAWSFDVNVTTIDRLLEARVESVILECTSCAEEEVMKMEEEAERERQEEEERRREEEEREREEEEARKREEEEREREEEEARKREEEEREREEEEERRREEEEREREEEEARKREEEEARKREEEEREREEEEARKREEEEREREEEEARKREKEEARKREEEEREREEEAERERREEEEEARRREEAERGEREAEREAEEARESEEAHRRERGRRRREAEREAEERQGRRREEEEEPTLRILXQRT 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5977290 5979597 - CmaCh03G007630.1 Cma03g00763 290334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00763 648 Pfam Cupin 259 412 IPR006045 -
Cma03g00763 648 Coils Coil 429 613 - -
Cma03g00763 648 PANTHER OS03G0336100 PROTEIN-RELATED 15 475 - -
Cma03g00763 648 Gene3D Jelly Rolls 247 430 IPR014710 -
Cma03g00763 648 CDD cupin_7S_vicilin-like_C 266 423 - -
Cma03g00763 648 Gene3D Jelly Rolls 42 220 IPR014710 -
Cma03g00763 648 Coils Coil 618 638 - -
Cma03g00763 648 CDD cupin_7S_vicilin-like_N 51 228 - -
Cma03g00763 648 MobiDBLite consensus disorder prediction 588 611 - -
Cma03g00763 648 MobiDBLite consensus disorder prediction 628 648 - -
Cma03g00763 648 SUPERFAMILY RmlC-like cupins 12 420 IPR011051 -
Cma03g00763 648 SMART Cupin_1_3 43 194 IPR006045 -
Cma03g00763 648 SMART Cupin_1_3 259 414 IPR006045 -
Cma03g00763 648 PANTHER PREPROMP73 15 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00763 - - - cpep:111804454 795.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00763 Cma-Chr3:5977290 Cma20g00473 Cma-Chr20:2281809 2.43E-51 dispersed
Cma03g00763 Cma-Chr3:5977290 Cma17g01194 Cma-Chr17:8248381 7.69E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00763 Cma_Chr03 FPKM 0.0 0.0 0.294032 0.331367 0.0 0.0 0.0 0.258438 0.327806 0.237227