Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00765 ATGCCGGCCGATGAAAAGGATTCGTCCATGGCTTCCGGGAAGGCTAGCGTTTCTTCTCCGGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTATCTCCGAAGACCCTTTTTGCCACAAATCGTTTTGTTTGTGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCATGACCCCTCCAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCTCATTCCAAAATTTGTGGAACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCTGGAGGGATAGCTTCATTAGACATAGAGCTTTCTGTGATGCATTGGCGAAGGAAAGTTCAAAAGCTCAGCCTATGCCGGTGGACAAACCGGATTTGCACTCCGACCACGATGGCGATTCTCAGTCGGCGTCGGTCAAACCAAATCTAGAGCCTTCTCCTCCACCTCCACCGCCACCGCCTCCGCCATCATCACCGCCGGTTTCATCTCCTCCACAGACTGGTGAGCTAATAACTGCATTACCTGTGCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTACTGAAGAAGCAACCAGTACACCTGGCCTGAGTCGGAGCAGCAGCAGCAGCAGCAGCAACAACAAGAGCGCGAGCAGCAATAGCAGCTCGAGAAGCAGCGGATTTGCTGGCTTATTTGCTTCCTCGATGACATCAAGGAGCCTTCAACCTCCAAGACCTCCTGGTTTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCATCATCTTCAACCATTGAACCCACTTCTCTGGGTCTTGCAATGAATCAAGGGCCATCGATCTTCGGAACGGCCAGCCAAGACCTCCGGCAGTACACACCGATGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCAGCTCAAATTGGTGCAACAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTCCTTCCTCTTTAGCTGCCCAGCAAGAGAACTTGCCATGGAACCACCAGAGCCATGGTCAACCTGATGGCATCTCAATCGCTGCAGGGCTCGGACTCGGACGTCCCTGTGATGGAAACTCAGGATTGAAGGAACTAATGATAGGAAACCATTCCATGTTTGCCCCAAAACATACCACCCTGGATTTCCTAGGATTGGGAATGGCAGCTGATGGAAGCCCCAACAGTGGCCTGGCTGCGCTAATTACATCAGTCGGCAGCAGTGTAGACATTGGGGTAACAACGTTATCATACGGTGGCAGCAGTGTAGACGTCGGGGTAACAACGTTATCATACAGCGGCAGCGGTGACATATCGGAGAAGAAAACCGAATCAGAATAA 1590 50.13 MPADEKDSSMASGKASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLFATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSWRDSFIRHRAFCDALAKESSKAQPMPVDKPDLHSDHDGDSQSASVKPNLEPSPPPPPPPPPPSSPPVSSPPQTGELITALPVPSQELSENPSQCTEEATSTPGLSRSSSSSSSNNKSASSNSSSRSSGFAGLFASSMTSRSLQPPRPPGFTDLMQAMACSDRSSDYASSSTIEPTSLGLAMNQGPSIFGTASQDLRQYTPMPQPAMSATALLQKAAQIGATASNASLLRGLGLVSSPSSLAAQQENLPWNHQSHGQPDGISIAAGLGLGRPCDGNSGLKELMIGNHSMFAPKHTTLDFLGLGMAADGSPNSGLAALITSVGSSVDIGVTTLSYGGSSVDVGVTTLSYSGSGDISEKKTESE 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5980960 5983456 + CmaCh03G007650.1 Cma03g00765 290336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00765 529 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 497 - -
Cma03g00765 529 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cma03g00765 529 Gene3D Classic Zinc Finger 110 190 - -
Cma03g00765 529 MobiDBLite consensus disorder prediction 186 295 - -
Cma03g00765 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 497 - -
Cma03g00765 529 MobiDBLite consensus disorder prediction 238 295 - -
Cma03g00765 529 MobiDBLite consensus disorder prediction 11 25 - -
Cma03g00765 529 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cma03g00765 529 Gene3D Classic Zinc Finger 36 106 - -
Cma03g00765 529 MobiDBLite consensus disorder prediction 216 237 - -
Cma03g00765 529 SMART c2h2final6 97 127 IPR013087 -
Cma03g00765 529 SMART c2h2final6 132 152 IPR013087 -
Cma03g00765 529 SMART c2h2final6 56 78 IPR013087 -
Cma03g00765 529 MobiDBLite consensus disorder prediction 1 39 - -
Cma03g00765 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01894 Cma-Chr1:12396752 Cma03g00765 Cma-Chr3:5980960 9.47E-140 dispersed
Cma03g00765 Cma-Chr3:5980960 Cma07g00501 Cma-Chr7:2157354 0 dispersed
Cma03g00762 Cma-Chr3:5974951 Cma03g00765 Cma-Chr3:5980960 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34642 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00765 K25869 - csv:101217597 655.21