Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00768 ATGTCGGGCCATTCCGATGATGAACACTCCTGCTCCAACTCCAATTCCTTCAGGACAATTTCCAGTGCTTTAAGTCCCTTCATTGGGGTTCATGATGATGAAGATTTCGGTTCAGAGTTCGTCTTCAAGATCGAACCCAGTTTGCTCATTGACCCTCGTCGTTTGAAGATCGGCGAAGTTATTGGGGAAGGTTCATGCTCCATTGTCTATCAAGGACTGTACGATTGTCAACCTGTTGCCGTGAAGATTATACAGGCAAGCAGAACATCAGCTATAAGTCCTGAAAAGAAGGAGATATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGCGCTTCCACAGAGCCGACATTGATGATAATCACTGAGCTTATGAAGGGTGGAACACTCCAGAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATTTGAAATTTTCCCTTAGTCTTGCTCTAGATCTGTCACGAGTAATGGCATACTTGCACGCAAATGGCATCATTCATCGCGACTTAAAGCCTAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTAGCCGACTTTGGGTTGGCCAGGGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCTCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTGTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCGAGTCTTGAGGACATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTCACACAAATCATAGATTCTCTTTCTAATCTTCTTCAAACATTTGTGTTAAAAGAATCTTCACTTCCCAACATGGACGACAAAACAGAGAAGGAGGTGGATTGTGCATCAGACACATCGGCTTCTCAGAGCAGGAGACAGCACAAGGCTAGAAGACATAGAAGCTCTTCATTCTGCCTCAAATTCTTCTTCGTCGGCAGAGGCGGTTTTAGCGGTGGCGCCACTCTTTTCTTCCGCCGTACACTGCATCTCTATCCTTCCCGTAGCCACCGCCAGCCGACAACAATCACATTCGCTCTCACACACATAATCGGATTTGGATTTCGAGAGATCCAGAATCCACAATTCTCAGCCGTTGATCATCCAGTCAACAACCTACATATAGACACGCCTTCCACCTGGACTTCCACATCATTCCTCTTGAAGTTTTCTTGCGCCATGAAAGCAGTCGTTTGTTTTCAGCATTGGTTGATGGGGACAGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAGCCTCTCTCTTCATCTCAGGACATAGCTCCGGCACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTATTTTGCGTCTACTGTTGCTTCTCCAACTCCCCACCCTTACATTTGGGGAGGCCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTTCCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCACCCCAATATCACCGTGACTCCTGGCTCAGCACCAATTAATGCAGAATATGAAGGAAAGTCCCCGGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCACGTCAGGAAATACTGGTTCAGGTGGTGGTAGGACCGGAGATAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGATAGTGGTACTGAGGGGTCATCAGAAGGCAGTGACGAGAACGCTAACCAACATGAATTGTCTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCTGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGCCAAATCTTCAGTAACTGGGAAACCCATCACCTCCATTCCTGGAACTAATCTGAACATGGGAATGGATTTGTGGAATAACACCACGGGTGCTTCAGGGGCTGGAAAAGTGAGAGCGAATGCCGTCTCCTCAGCCATTGGTCCAACACCGATGGTTGGTCGTGATGGTGTGATGCCTGAGCAATGGGTTCAAGACGAACGTGAGCTGAAAAGGCAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCAAGATTACGCAAGCAGGCGGAGTGTGAAGAATTACAGGCGAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGCTGCAGAGGCTCTCCGAGGAATGTGAAAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCAGAAGCATTAGCCAACTTTGAAAAAGGAATTGCTGCTCCTGCTGCCCAATCTCGCGACGACGAGGGTAAGGACTAA 2487 47.25 MSGHSDDEHSCSNSNSFRTISSALSPFIGVHDDEDFGSEFVFKIEPSLLIDPRRLKIGEVIGEGSCSIVYQGLYDCQPVAVKIIQASRTSAISPEKKEIFQREVMLLSRVNHENVIQFIGASTEPTLMIITELMKGGTLQKYLWSIRPETPDLKFSLSLALDLSRVMAYLHANGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEDIPEDIAPLLQSCWAEDPNGRPEFTQIIDSLSNLLQTFVLKESSLPNMDDKTEKEVDCASDTSASQSRRQHKARRHRSSSFCLKFFFVGRGGFSGGATLFFRRTLHLYPSRSHRQPTTITFALTHIIGFGFREIQNPQFSAVDHPVNNLHIDTPSTWTSTSFLLKFSCAMKAVVCFQHWLMGTGEEGTPSKTSKPLSSSQDIAPAPSYPDWSSSMQAYYGAGATPPPYFASTVASPTPHPYIWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSAPINAEYEGKSPDGKERASKKSKGTSGNTGSGGGRTGDSGKVASSSGNDGASQSADSGTEGSSEGSDENANQHELSANKKGSFNQMLADGANAQNNTGGPNAKSSVTGKPITSIPGTNLNMGMDLWNNTTGASGAGKVRANAVSSAIGPTPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGIAAPAAQSRDDEGKD 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5987278 5994631 - CmaCh03G007680.1 Cma03g00768 290339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00768 828 SMART serkin_6 55 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00768 828 Coils Coil 742 797 - -
Cma03g00768 828 MobiDBLite consensus disorder prediction 651 677 - -
Cma03g00768 828 Gene3D Transferase(Phosphotransferase) domain 1 136 364 - -
Cma03g00768 828 Pfam Protein tyrosine and serine/threonine kinase 55 313 IPR001245 GO:0004672|GO:0006468
Cma03g00768 828 CDD STKc_MAP3K-like 61 313 - -
Cma03g00768 828 CDD bZIP_plant_GBF1 734 784 IPR045314 GO:0003700|GO:0006355
Cma03g00768 828 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Cma03g00768 828 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Cma03g00768 828 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Cma03g00768 828 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672|GO:0006468
Cma03g00768 828 ProSiteProfiles Protein kinase domain profile. 55 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00768 828 MobiDBLite consensus disorder prediction 467 487 - -
Cma03g00768 828 SUPERFAMILY Protein kinase-like (PK-like) 48 323 IPR011009 -
Cma03g00768 828 MobiDBLite consensus disorder prediction 468 487 - -
Cma03g00768 828 Gene3D - 732 789 - -
Cma03g00768 828 SUPERFAMILY Leucine zipper domain 732 788 IPR046347 GO:0003700|GO:0006355
Cma03g00768 828 Gene3D Phosphorylase Kinase; domain 1 44 135 - -
Cma03g00768 828 MobiDBLite consensus disorder prediction 562 634 - -
Cma03g00768 828 MobiDBLite consensus disorder prediction 585 634 - -
Cma03g00768 828 PANTHER G-BOX-BINDING FACTOR 3-RELATED 463 826 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma03g00768 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Cma03g00768 828 SMART brlzneu 729 793 IPR004827 GO:0003700|GO:0006355
Cma03g00768 828 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 736 751 IPR004827 GO:0003700|GO:0006355
Cma03g00768 828 Pfam bZIP transcription factor 729 791 IPR004827 GO:0003700|GO:0006355
Cma03g00768 828 MobiDBLite consensus disorder prediction 332 354 - -
Cma03g00768 828 Pfam G-box binding protein MFMR 463 556 IPR012900 -
Cma03g00768 828 PANTHER G-BOX-BINDING FACTOR 1 463 826 - -
Cma03g00768 828 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 731 794 IPR004827 GO:0003700|GO:0006355
Cma03g00768 828 MobiDBLite consensus disorder prediction 728 755 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00768 Cma07g00503 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00768 Cma-Chr3:5987278 Cma10g00092 Cma-Chr10:373193 2.19E-101 dispersed
Cma14g02088 Cma-Chr14:14446707 Cma03g00768 Cma-Chr3:5987278 2.68E-41 dispersed
Cma16g01193 Cma-Chr16:9100070 Cma03g00768 Cma-Chr3:5987278 3.43E-57 dispersed
Cma03g00768 Cma-Chr3:5987278 Cma07g00503 Cma-Chr7:2163688 1.98E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34643 PF07714 PK_Tyr_Ser-Thr 2.40E-53 CL0016 Cma TF
68422 PF07714 PK_Tyr_Ser-Thr 2.40E-53 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00768 K09060 - csv:101217128 645.58