Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00769 ATGGCCGCCGTCAATCTCCGACCAGACGACGACAATTCTACACTCATCTCCCACTTCTACAATCCTGAAATTTACACCCAAATGCTACCCCAACAAGGTACGGCAGAGGGAAACAAGCCGACGAAGAGACGGCGGAGGAGGAGCAGAGTGAAGGAGGTGGCCTCAACCGCCGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGAAACGAGCACAAATTGGAAACGGAGAGGAAAAATCGGTTGGCTTCAGAATTAGGCCTTGATCCAAGCCAAGTCGCCATCTGGTTTCAGAACCGCCGTGCGCGGTGGAAGAACCAGAAACTGGAACACCAATATTCCATTCTCAAAAAAGCTCACGATTCTGCTGTTCTCCAAAAAACCCATCTTCAATCTCAGATAGAGAAACTGAAACAGCAACTAGCGGAAGCGAAGAATGAGATACAGAAACTGGTGGAAGTACGCGAGATCAACCGGAGGTCGTCGGTGACGATGGATGACGTGCAAGCGGCGGCGTGTTGGGGAGAGATATTAATGGAAGAATATGAAGATGTATTCTGCTCTATGCAAGAGAACAATTATAATCAACCAGTGGAGTGGTACCTTAATTATAATTATATGTACACTAATTAA 657 46.73 MAAVNLRPDDDNSTLISHFYNPEIYTQMLPQQGTAEGNKPTKRRRRRSRVKEVASTAGLKKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSILKKAHDSAVLQKTHLQSQIEKLKQQLAEAKNEIQKLVEVREINRRSSVTMDDVQAAACWGEILMEEYEDVFCSMQENNYNQPVEWYLNYNYMYTN 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5995766 5997148 - CmaCh03G007690.1 Cma03g00769 290340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00769 218 Coils Coil 128 162 - -
Cma03g00769 218 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Cma03g00769 218 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Cma03g00769 218 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Cma03g00769 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 211 IPR045224 GO:0003700
Cma03g00769 218 SUPERFAMILY Homeodomain-like 59 124 IPR009057 -
Cma03g00769 218 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Cma03g00769 218 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Cma03g00769 218 MobiDBLite consensus disorder prediction 29 54 - -
Cma03g00769 218 Gene3D - 52 122 - -
Cma03g00769 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 10 211 - -
Cma03g00769 218 CDD homeodomain 60 116 IPR001356 GO:0003677
Cma03g00769 218 SMART HOX_1 58 119 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00769 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101216890 306.219
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00769 Cma07g00504 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00769 Cma-Chr3:5995766 Cma15g00329 Cma-Chr15:1521359 1.43E-25 dispersed
Cma03g00769 Cma-Chr3:5995766 Cma04g00773 Cma-Chr4:3938724 1.85E-44 wgd
Cma03g00769 Cma-Chr3:5995766 Cma07g00504 Cma-Chr7:2173580 1.75E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g927 Blo04g00927 Blo16g00037 Bda04g00064 . . Bpe13g00454 . . Cmo04g00828 . Cma03g00769 Cma07g00504 . Car07g00441 Sed07g1686 Cpe19g00797 . Bhi03g01269 Tan03g1958 Cmetu07g2129 . Hepe04g1489 . . Cla01g01886 Cam01g1978 Cec04g1629 Cco04g1694 Clacu01g1998 Cmu01g1868 Cre04g1550 Cone8ag0797 Cone12ag0756 . Cone9ag1531 Lsi01g00699 . Chy07g01276 Cme08g00826 . Blo06g00125 Bda11g01876 . Bpe10g00106 Bpe06g00054 . Bma06g00130 . Cmo03g00798 . . . . . . . . . . . . . . Cla07g00851 Cam07g0923 Cec07g0983 Cco07g0966 Clacu07g0899 Cmu07g0899 Cre07g1264 . Csa06g03219 Chy02g00668 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002434 2 1 3 1 3 2 2 2 2 2 2 2 3 2 2 1 2 3 3 2 2 2 2 2 2 1 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34644 PF00046 Homeodomain 1.50E-16 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00769 Cma_Chr03 FPKM 4.633103 7.283344 0.0 0.0 0.0 0.0 0.0 1.87826 1.810156 1.813065