Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00770 ATGGGTAAGGGAGGGGGTTGTGTCCCGAGCAAGAAGAAGGTGCCTTCGTCTATTGCCGCCGAGGCCACAGATGATGCAAGGGCTCATGATGGCGAAAGAAGTACCCCGATCCCTATTGAAGAAGATCAGCCACCGATTGGTTCATCGGGCAATGCAACTTCCGAGGTCTCCGTCTCGGTGTCGCATCCAGTTGAGAAATTGAAGATATTCATAGTGTTTTACTCCATGTACGGTCACGTCGAAAGCTTGGCGAAGAGGATGAAGAAGGGGGTTGATGGGGTGGATGGGTTTGAGGGGATTTTGTACCGGGTGCCGGAGACCTTGCCGGCGGAGGTTCTAAACCAGATGAAAGCGCCGCCCAAGGACCCGTCCATTCCGGAGATTTCAGCCGCTGAATTGGTGGCTGCGGATGGCATTTTGTTTGGTTTTCCCACCAGGTTTGGGTGTATGGCAGCGCAAATGAAGGCGTTCTTTGATTCGACGGGGCAGCTCTGGAAAGAGCAGAAGCTTGCAGGGAAGCCTGGCGGATTCTTTGTTAGCACAGGGACTCAAGGGGGCGGCCAAGAAACAACTGCGTGGACTGCAATTACCCAGTTAGCACACCATGGAATGCTGTTTGTTCCCATAGGCTACACTTTTGGTGCTGGAATGTTCAAGATAGACACAATACGAGGGGGGTCTCCTTATGGTGCAGGAGTTTTTGCTGGTGATGGCTCAAGACAGCCAAGCGAAACAGAGTTGGCGCTTGCAGAGCATCAGGGCAAATACATGGCTGCCACAGTCAAGAAGCTTTTCCAGGCTTGA 804 52.74 MGKGGGCVPSKKKVPSSIAAEATDDARAHDGERSTPIPIEEDQPPIGSSGNATSEVSVSVSHPVEKLKIFIVFYSMYGHVESLAKRMKKGVDGVDGFEGILYRVPETLPAEVLNQMKAPPKDPSIPEISAAELVAADGILFGFPTRFGCMAAQMKAFFDSTGQLWKEQKLAGKPGGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKIDTIRGGSPYGAGVFAGDGSRQPSETELALAEHQGKYMAATVKKLFQA 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6000921 6002585 + CmaCh03G007700.1 Cma03g00770 290341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00770 267 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 10 266 - -
Cma03g00770 267 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 10 266 - -
Cma03g00770 267 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 68 264 IPR010089 GO:0003955|GO:0010181
Cma03g00770 267 MobiDBLite consensus disorder prediction 23 37 - -
Cma03g00770 267 SUPERFAMILY Flavoproteins 68 264 IPR029039 -
Cma03g00770 267 MobiDBLite consensus disorder prediction 1 54 - -
Cma03g00770 267 Gene3D - 66 265 IPR029039 -
Cma03g00770 267 Pfam NADPH-dependent FMN reductase 83 209 IPR005025 GO:0016491
Cma03g00770 267 ProSiteProfiles Flavodoxin-like domain profile. 69 257 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00770 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101216659 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00425 Cma-Chr2:2149367 Cma03g00770 Cma-Chr3:6000921 9.34E-110 dispersed
Cma03g00770 Cma-Chr3:6000921 Cma16g00840 Cma-Chr16:4853807 1.53E-90 dispersed
Cma03g00770 Cma-Chr3:6000921 Cma04g00930 Cma-Chr4:4798364 4.59E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g926 . . Bda04g00065 . . . Bma09g00061 . . . Cma03g00770 . Car03g00700 . Sed10g0902 . Cpe10g00593 Bhi03g01268 Tan03g1957 Cmetu08g1080 . Hepe04g1488 . . Cla01g01885 Cam01g1977 Cec04g1628 Cco04g1693 Clacu01g1997 Cmu01g1867 Cre04g1549 . . . . Lsi01g00700 . . Cme08g00825 Blo05g00784 . . . . Bpe06g00055 . . . Cmo03g00799 . . . . . . . . . . . . . . . . . . . . . . Csa06g03217 Chy02g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011297 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00770 Cma_Chr03 FPKM 57.874413 62.992374 20.608286 18.895618 12.418031 11.404902 13.361299 58.801548 56.750759 55.334148