Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00772 ATGGCGGATACGCTGAGCGCTTTGAGACTTCTAATGGCGTCCCATAATCCTCCGCTTGACGCCTTGGTTGTTCCTTCAGAGGACTATCACCAGAGTGAATACGTATCTGCGAGAGATAAGCGACGTGAATTTGTTTCAGGTTTCACCGGAAGTGCTGGTCTGGCACTTATAACCCAGAAACAAGCCTTACTGTGGACCGATGGCCGGTATTTTCTGCAGGCAATTCAGCAGCTTAGTGATCAGTGGAAACTTATGCGAATTGGAGAGGATCCTTCTGAAGATCTCTGGATGGCAGATAATCTGCCAGCGGATGCAGCCGTTGGAGTGGATCCTTGGTGTGTGTCAGTGGACACTGCACAAAAGTGGATCCACACATTTTCCAAGAAGCAGCAGAAGCTGGTTCAAACTTCCACAAACTTAGTTGATGAAGTTTGGAAGAATCGACCACCACCAGAAATAAATCCTGTTATCATACACCCACTTGAATATGCTGGCCGCTCTGTTGAAGATAAGTTGAAGACTTTGAGAGCAAAGCTCTCGCGAGAGAAAGCTCATGGTTTAATTGTGGTTGGACTTGATGAAGTAGCTTGGTTGTACAACATCCGTGGGAGTGATGTGTCATACTGTCCAGTTGTACATGCATTTGCAATAGTGACACTCAATTCAGCATTCTTTTACGTGGAGAAGAGGAAGGTTTCTGATGAGGTGCGCTTGTACATGGAAAAAAATGGAATTGAAGTTCGGGACTATAGTGCAGTAATAACAGATGTGTCCTCACTTGCATCTAATCAACTTAACATGTCATCTAGTTCAATCGACATTGCAGGATCTAATGGAACTAAAGTAGAAAGCCAGAGTTCTGGCCTCATATGGGCTGATCCTGCACAATGCTGCTATGCTTTGTATTCTAAACTGAACTCTGATGAAGTTCTCCTGCAACAGTCGCCATTGGCTCTTGCAAAAGCTCTCAAGAACTCTGTTGAGTTGGACGGACTAAAGAATGCACACATTCGGGATGGTGCAGCTGTTGTACAATATCTTGTGTGGCTGGACAAGCAGCTGCAAGAGACTTATGGGGCTTCTGGTTACTTTCTGGAAGGGGATGGAGTGAGGAAGCCCAAACCTTCGGACTCGGAGAAACTGACAGAAGTTAGTGTAAGTGATAAGCTTGAAGCTTTCCGAGCATCAAAGAAGCATTTTAGAGGCCTAAGTTTCCCTACTATTTCCTCTGTTGGTCCAAATGCTGCAATTATACATTATGGACCACAAGCAGAGACGTGTGCCGAGTTGGATCCTGAAAGCATGTATCTTTTTGACTCAGGAGCTCAGTATTTGGATGGAACAACTGATATCACACGGACAGTCCATTTTGGATTACCTTCAGCTCATGAAAAAGCTTGTTATACTGCAGTTCTCAAAGGCCATATTACTTTGGGAAATGCAAGATTTCCAAATGGCACAAATGGCCAGCAATTGGATATTCTTGCTCGAGTTCCTTTGTGGAAGGATGGTCTGGATTATCTACATGGCACTGGCCATGGAATTGGTTCTTTCCTTAATGTTCATGAAGGGCCTCATTTAATTAGTTTCAGACCTCGTGCTCGAAATGTTCCACTTCAAGCTTCAATGACTGTTACGGATGGCCAGCAATTGGATATTCTTGCTCGAGTTCCTTTGTGGAAGGATGGTCTGGATTATCTACATGGCACTGGCCATGGAATTGGTTCTTTCCTTAATGTTCATGAAGGGCCTCATTTAATTAGTTTCAGACCTCGTGCTCGAAATGTTCCACTTCAAGCTTCAATGACTGTTACGGATGAGCCTGGCTATTACGAGGATGGTGCCTTCGGTATTAGATTGGAGAATGTACTTATAGTAAAGAACGCTGACACAAAATTTAATTTTGGCGATAAAGGCTACTTATCATTCGAGCACATAACATGGGCACCGTACCAGAGAAAGTTGATCAACACAAGTCTTCTCACATCTGAGGAATTGGATTGGTTGAACAGTTACCATTCAAAGTGTAGGGATATTCTTGCTCCTTATTTGGATGAATCCGAGAAGGCATGGCTGAATAAAGCCACTGAGCCAATTCCTGCCTGA 2106 44.02 MADTLSALRLLMASHNPPLDALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITQKQALLWTDGRYFLQAIQQLSDQWKLMRIGEDPSEDLWMADNLPADAAVGVDPWCVSVDTAQKWIHTFSKKQQKLVQTSTNLVDEVWKNRPPPEINPVIIHPLEYAGRSVEDKLKTLRAKLSREKAHGLIVVGLDEVAWLYNIRGSDVSYCPVVHAFAIVTLNSAFFYVEKRKVSDEVRLYMEKNGIEVRDYSAVITDVSSLASNQLNMSSSSIDIAGSNGTKVESQSSGLIWADPAQCCYALYSKLNSDEVLLQQSPLALAKALKNSVELDGLKNAHIRDGAAVVQYLVWLDKQLQETYGASGYFLEGDGVRKPKPSDSEKLTEVSVSDKLEAFRASKKHFRGLSFPTISSVGPNAAIIHYGPQAETCAELDPESMYLFDSGAQYLDGTTDITRTVHFGLPSAHEKACYTAVLKGHITLGNARFPNGTNGQQLDILARVPLWKDGLDYLHGTGHGIGSFLNVHEGPHLISFRPRARNVPLQASMTVTDGQQLDILARVPLWKDGLDYLHGTGHGIGSFLNVHEGPHLISFRPRARNVPLQASMTVTDEPGYYEDGAFGIRLENVLIVKNADTKFNFGDKGYLSFEHITWAPYQRKLINTSLLTSEELDWLNSYHSKCRDILAPYLDESEKAWLNKATEPIPA 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6004628 6013065 + CmaCh03G007720.1 Cma03g00772 290343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00772 701 Pfam Creatinase/Prolidase N-terminal domain 147 328 - -
Cma03g00772 701 Gene3D - 146 320 IPR029149 -
Cma03g00772 701 PANTHER AMINOPEPTIDASE P1 2 547 - -
Cma03g00772 701 PANTHER AMINOPEPTIDASE P1 546 699 - -
Cma03g00772 701 CDD APP 331 636 IPR033740 GO:0070006
Cma03g00772 701 Gene3D Creatinase/methionine aminopeptidase superfamily 322 546 IPR036005 -
Cma03g00772 701 ProSitePatterns Aminopeptidase P and proline dipeptidase signature. 568 580 IPR001131 -
Cma03g00772 701 PANTHER XAA-PRO AMINOPEPTIDASE 1 546 699 - -
Cma03g00772 701 SUPERFAMILY Creatinase/prolidase N-terminal domain 41 130 IPR029149 -
Cma03g00772 701 Pfam Creatinase/Prolidase N-terminal domain 6 142 IPR000587 GO:0016787
Cma03g00772 701 PANTHER XAA-PRO AMINOPEPTIDASE 1 2 547 - -
Cma03g00772 701 SUPERFAMILY Creatinase/aminopeptidase 326 546 IPR036005 -
Cma03g00772 701 Pfam Metallopeptidase family M24 548 627 IPR000994 -
Cma03g00772 701 Pfam Metallopeptidase family M24 380 546 IPR000994 -
Cma03g00772 701 Gene3D Creatinase/methionine aminopeptidase superfamily 547 700 IPR036005 -
Cma03g00772 701 SUPERFAMILY Creatinase/aminopeptidase 549 665 IPR036005 -
Cma03g00772 701 Gene3D - 1 145 IPR029149 -
Cma03g00772 701 Pfam C-terminal region of peptidase_M24 640 699 IPR032416 -
Cma03g00772 701 ProSitePatterns Aminopeptidase P and proline dipeptidase signature. 509 521 IPR001131 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00772 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] - csv:101216415 1043.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00772 Cma07g00505 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01071 Cma-Chr12:8468433 Cma03g00772 Cma-Chr3:6004628 4.25E-42 transposed
Cma03g00772 Cma-Chr3:6004628 Cma07g00505 Cma-Chr7:2179002 1.33E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g924 . Blo16g00036 . . . Bpe13g00455 . . . . Cma03g00772 Cma07g00505 Car03g00702 Car07g00442 Sed14g1097 Cpe19g00796 Cpe10g00592 Bhi03g01267 Tan03g1954 Cmetu05g1256 . Hepe04g1486 . . Cla01g01884 Cam01g1975 Cec04g1627 Cco04g1691 Clacu01g1996 Cmu01g1866 Cre04g1547 . . . Cone9ag1530 Lsi01g00701 . . Cme08g00824 . . Bda11g01877 . . . . . . Cmo03g00802 Cmo07g00503 . . . . . . . . . . . . . . . . . . . . . Csa06g03215 Chy02g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007552 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00772 Cma_Chr03 FPKM 18.093168 17.741276 16.800537 16.548029 11.583244 12.755688 11.904521 22.950985 20.069613 21.205896