Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00774 ATGCTGAGGTGCTTATTGGTCATAGCTTCGTTCTTCCTCTCCTCCGCCTCTGCACAGCACAACGACCCCCATAAACGTCAATGGCTCACCTTGAGAGGGGAAGAGCCAATAGTGATAGCAAGAGGAGGGCTATCTGGAGTGTTCCCAGAATCAAGCCCCTTTGCAAATCAAATGGCATTGGCTTCAGGTTTACATAACAAAACTGTGTTGTACTGCAACCTCCAGCTGACCAAAGATGGGATAGGCCTTTGCTTAACTGATCTCAGGCTTCAAAACTCGACCAACATTGAAGACATCTTCCCACAGCCTCATAAGCATTACAACGTTTATGGAAAGATTATCAGTGGATTGTTTTCTGTTGATTTCATGTCTGAGGATCTCTTTAACAGAGTCTACATGATTCAAAGTATCTTCTCCCGACCTAGTGTCTATGATGGTACGTGGCCAGTAGCTGCTGTTGAAGACGTCGTTCGGATTAAACCATCTCGGTTTTGGTTGAACGTCGAGGTATTTGATACTCATATTGTTAAGACTTCGTTTGATAACTATTTGATTGGGTTTGATCTTTTCCAGTATGAGGCATTCTATGCAGAACATAATCTGAGTGTCTCATCATACCTTCAAAAGGCATTGAGATTGATGGCTATAAACTATGTGTCATCTTCGGAGATTGGGTTGTTGAGAGGGCTAAGTGGGAGTGTGAACAAAGGCAGAACAAAGCTGATCTTCCGGTTCTTAGAAGCCAATGAAACAGAGCCAACAACAAAGAAAACATACGGTGCATTGGCTCAAGAACTGGCCATGATCAAGTCATTTGCCTCGGGAATTCTCATCAGAAAAGAATACATTTGGCCAATTGGTTCAGACAAGTACGTGCAGCCTGCAACAAGCCTTGTCATGGATGCCCATAAGCTTGGCTTGGAAGTTTATGCTTCTGGCTTTGCTAATGATGCTATGGTTGGTTACAATTATAGTTATGATCCAATCCGTGAGTACCTTCAGTATGTGGATAATGGCCAATTTGCTGTTGATGGGGTCCTCTCGGATTTCTCTCCTACTGCTTTTCAAGCCATTGCCTGCTATTCGAGTTTTCGGAACAACGGCAAGGCTCAACCTGGAGTAAAGGAAGCATTGGTGATAAGCAGCAATGGGGCAAGTGGGGATTTCCCAGGCTCGACTGACGTTGCTTACCAAAGAGCAATTGATGATGGGGCTGACGTTATTGATTGTTCAGTTCAATTATCAAAAGATGGAGTAGCATTGTGCATGAACATGGCGGATCTGTTGACAACCACCACTGCTATCACCGCTTTCTCCGATCGAACTACAACCATCCCTGAACTTCAACCCCAAGTTGGGATCTTCTCTTTTGATCTTACCTGGGCTGAGATTCTTACTCTCAAGCCTCAAATTACAAACCCTTTCATGGCCTCTTCTGGGCTTGCCCGTAATCCAGCGTTTAAGAACAAGGGCAACTTCGTGACCCTTCCTGACTTTCTGGAGTTTGCTAAAGCCAAAGCTGTTTCTGGAATTATGATCAACATCCAAAACGCAGCATACTTGGCTTCAAAGAAAGGTCTGGACATGGTGGGAAGCGTAGCCACAGCCCTAAGCAATGCCACTTTTGACAAGCAATCAACTCAACAAGTGTTCATCAGATCAGACGACACTTCTGTGCTGTCCATTTTCAAGGCCAAGTTCCCAAATTTCATAAGAGTTTTAACGGTTGACTCCAAGATTGGTGATGTCCCAAACAATGCCCTTGAAGAGATCAAACGCTACGCCCAAGCTGTGGCCATTCCTCGTGCCTCTATCATTGAAGTAACCAACTACTTCACCACTGGCCTCACCAAAGTCGTCTCTGAAATGAAAGCTTCCAATCTCTCTATCTTTGTGTATGTCCTGAGGAACGAATACGTCTCCTTGGCTTTTGATTACTACGCCCAACCCTCCTTGGAGATCGCTACCTATGTCGACTACTTCCACGTCGACGGCGTCATAACTGAATTTCCTAAAACTACAAAACAATATATGACATGTCCATGCCGACCGACTCAACCCGACCTGAACGTAGCTCCATATATAATCTTGCCACCAGAAATTGGTTTGCTCATGAGTATGGTGCCTTCAGAGGCTAAACCACCTTCCGATCCTCCATTGCCACCATTGGATGCTGGAGATGTCGTCGACCCACCGCTCCCACCGGTGACCGCTCGTTCCACTGACGCCAACAGGCCTGCCGCGGCCACCCGATCAGCAGCTGTATCAAATGTTGCAAACTTGTTTCTTTCTTTACTCTTAGTTGTTGTGGACAGCTTCTTCCATTCCCACAATACTTAA 2340 45.43 MLRCLLVIASFFLSSASAQHNDPHKRQWLTLRGEEPIVIARGGLSGVFPESSPFANQMALASGLHNKTVLYCNLQLTKDGIGLCLTDLRLQNSTNIEDIFPQPHKHYNVYGKIISGLFSVDFMSEDLFNRVYMIQSIFSRPSVYDGTWPVAAVEDVVRIKPSRFWLNVEVFDTHIVKTSFDNYLIGFDLFQYEAFYAEHNLSVSSYLQKALRLMAINYVSSSEIGLLRGLSGSVNKGRTKLIFRFLEANETEPTTKKTYGALAQELAMIKSFASGILIRKEYIWPIGSDKYVQPATSLVMDAHKLGLEVYASGFANDAMVGYNYSYDPIREYLQYVDNGQFAVDGVLSDFSPTAFQAIACYSSFRNNGKAQPGVKEALVISSNGASGDFPGSTDVAYQRAIDDGADVIDCSVQLSKDGVALCMNMADLLTTTTAITAFSDRTTTIPELQPQVGIFSFDLTWAEILTLKPQITNPFMASSGLARNPAFKNKGNFVTLPDFLEFAKAKAVSGIMINIQNAAYLASKKGLDMVGSVATALSNATFDKQSTQQVFIRSDDTSVLSIFKAKFPNFIRVLTVDSKIGDVPNNALEEIKRYAQAVAIPRASIIEVTNYFTTGLTKVVSEMKASNLSIFVYVLRNEYVSLAFDYYAQPSLEIATYVDYFHVDGVITEFPKTTKQYMTCPCRPTQPDLNVAPYIILPPEIGLLMSMVPSEAKPPSDPPLPPLDAGDVVDPPLPPVTARSTDANRPAAATRSAAVSNVANLFLSLLLVVVDSFFHSHNT 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6014474 6018382 + CmaCh03G007740.1 Cma03g00774 290345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00774 779 CDD GDPD_SHV3_repeat_2 377 677 - -
Cma03g00774 779 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 1 769 - -
Cma03g00774 779 MobiDBLite consensus disorder prediction 712 729 - -
Cma03g00774 779 ProSiteProfiles GP-PDE domain profile. 36 358 IPR030395 GO:0006629|GO:0008081
Cma03g00774 779 MobiDBLite consensus disorder prediction 708 746 - -
Cma03g00774 779 ProSiteProfiles GP-PDE domain profile. 377 678 IPR030395 GO:0006629|GO:0008081
Cma03g00774 779 SUPERFAMILY PLC-like phosphodiesterases 378 678 IPR017946 GO:0006629|GO:0008081
Cma03g00774 779 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 769 - -
Cma03g00774 779 Pfam Glycerophosphoryl diester phosphodiesterase family 383 673 IPR030395 GO:0006629|GO:0008081
Cma03g00774 779 Gene3D Phosphatidylinositol (PI) phosphodiesterase 376 679 IPR017946 GO:0006629|GO:0008081
Cma03g00774 779 Gene3D Phosphatidylinositol (PI) phosphodiesterase 34 358 IPR017946 GO:0006629|GO:0008081
Cma03g00774 779 SUPERFAMILY PLC-like phosphodiesterases 36 357 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01100 Cma-Chr1:8063260 Cma03g00774 Cma-Chr3:6014474 1.63E-179 dispersed
Cma03g00774 Cma-Chr3:6014474 Cma09g00980 Cma-Chr9:4982997 0 dispersed
Cma03g00774 Cma-Chr3:6014474 Cma07g00505 Cma-Chr7:2179002 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00774 - - cpep:111803809 1288.09