Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00775 ATGGTAAGTCAGGTGACCGCGCCTTTTCAGTCGGCCATGGACGAAGCCCCTATTTGTGCACCCACTTGCAGCGCCTTTGTCGATGAAACCACCGACAATGACCGTGAAGAAATTACGGCGCCTGACTCATCTCCGGGGAACTCAACCCGGACGCTTTACGACCCTCCGCCGTGCTCAAATCGATATAGGAAGAAGAAGAAGAAGAAGAAAAAGGTTATTATTGATAACGCCCAAGAACTGATTTACTCGTCCTCTTCTTGTTCTTCTCCCGCAAGATTGATACACAGAGGTGTCAATTGCAAACGCCGACGCCCCAAGGTTCTACTTGTCCAACCGCGGCGTGTCGATTGTGATTTTGAAAGCGTGGCGCTTTTATTGGGGATGTCATTCGCAGCTTTTGTTTCTCAGGTGTTTGAGAGGCAGGACATGTCTAGTGAAAGGATGTCTGTTGATCATCTCTCAATGATTTGCACTTCAGCTATAAGAGAATCTTTGGTCAATGTTTTTGGGGACAAGCTCGATTGGTTTTTGAAGAAATTTGAGAAGTCGTTTGGCAGCACGTTAAGAACTCTTAGATCAATTAGTGAATCATCTGCTAGAACTGGTGTGAATTTCTCCAGCAAGCGCAAAGAAGAAAACATCACCGTGGATCTGACCCCTGATAGGAAACGGGATGGGACAAGTAGCTCTAGTCTGGAAGAGTCTTCTAGGACAGATGCCCCTGTTGATCAACTAAGTTTAATTGAAGAGGTAAATGAAAGCGTTTCTGATTCATTGGGTCGGGAGTTAGCTTTGTGTAGACTGACAGACGATGTGCCTTCTATTGCCCCACGGCCAGTTGGTTGCCATAGCAATGAGGTATCCGTTGGCACTTTCGAAAGATCTGTTGTCGAACAGGCACGTTCCAACGATCTTAGAACATTGGAGTTTGGCCTTGCATTGAGGAAATTAAAGTTGAAAGAGACACAAATCGCACTCAATTGTGAATTAAACAATCTTGAGAGGTCGAAATTGGCAATGGGCATATCAAAAGCCTCTTTTAAGGCAGAGAAGTTCAAGAATCAGTTAGAAGACACGAGACAATCGGAACTGCTTAAGAACTGCAGAGACTGTCTCGTTGCTGGTTTTCTTATAATGTTGGTTGCCCTCTCTTATGGAGCATATGTTTATTCATATCAAAGAATCTCTGAAGCTACTTCAATCTGTACACCAACTCAGGACTCAAAATCTTGGTGGATGCCAAATCCCATGGCATCTTTGAACTCCGGATGGCATATGTTAAGGTGTCAAGTTCAAGTTGTGAGCCGGTTGGCGTTCGGTGGGATCATGATTCTTGCAATAGCTTACTTGCTAATCCAACGCTCAGCTACTTCAAATCAGGCAATGCCAGTTACTTTCATCGTCTTGTTGCTTGGAGTAGCCTGCGGTTTAGCTGGGAAGTTCTGCATAGACACACTGGGAGGAAGCGGATTGCATTGGCTCATGTTTTGGGAGATCATGTGCTCAATGCACTTATGTGCAAATCTTTTTACATCAGCACTGTTTCTGATCTTACAGGGGCCGGTCGAAGTTTCTCAAGGGAAAAATCGTCACTCAATCTTGCCATATTGGATTCGCCGTGCTGTATTCTACGCCCTTCTTCTTGTATTTCTGCCATTGTTGTGTGGACTGATACCATTTGCAGGTGTAGGTGCATGGAAAGATCATTTTTTTCTCCTGAATGAGAAGAAGGTCCATACCGGAGCTGGATTGCCGGTACTGAAGAATTGGGAGCCGCTGCAGAGAGATTTGTTGCTGCTGTCTGAAGAAGTCATGACGGGCAGAGGGCCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAATAATAAGAGGAGGGAGAGGCGTCGGAGGGCCATTGCTGCTAAGATCTACACTGGTCTTAGAGCTCAGGGGAACTATAAGCTTCCTAAACACTGTGACAACAACGAGGTCCTGAAGGCACTCTGTAATGAGGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGGAAGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCCTGCTTCCCGAGTCCTGTACCATCCTACCATGCCAGTCCTTCCTCGTCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTTCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTCACACCACCTCTCTCTTCCCCGACGTCAAGGGGTTCTAAGCGAAAACCAGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCATTCTTTGCTGTATCCGCTCCTTCAAGTCCAACAAGATGCCACCATCTTACACCGGCTACAATCCCCGAATGTGACGAGTCGGACGCTTCAACTGTGGACTCTGGTCGCTGGGTCAGCTTCCAGACTGTGGCACCTTCCGTGGCTCCTCCTTCCCCTACGTTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCATGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACCTCTGATAGGGGACGAGGCTCCGAGTTTGAATTTGAGAAATTTGAGAGTGGCGCAGTGAAGGCGTGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGACGACTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTTATCCTGGTTCGCCTTCTTGCAAAACTCTGAACTCGTTACTACAGCTTGTAGTGGAAGAGCAATCAAAATTTGAGTCAAGGCCCAGGAAAGGACATCATTCGCTACTGGAAAATGAGAAGAACAATGCCATTGTCATGGTTATATATTTTTCCTTCCCTCTCGGAGTGCTTTCAATTTTTTTTCAGGATCGCATGGTCCTTAGAGTAGAGATTGCTCACCTGTATCAGACATTTCTTAACGTGATAGAAACGAACAACCAACTGTGGGGGAAAAATTGCTATGAACATTGCCCATTTTCTTCCTGTGGTAGCCTGGTGGGGTGGTGTCCTTCCCTGTTGTGCTCTGTGGTGCCAGTGGATCTTTGCGTGCTGCTCTTTTTTCGCAGATTGTTTACGTACCGACCAATTAATTCAGCAACTGCCTCTCAGAATGATCAATAA 3207 46.71 MVSQVTAPFQSAMDEAPICAPTCSAFVDETTDNDREEITAPDSSPGNSTRTLYDPPPCSNRYRKKKKKKKKVIIDNAQELIYSSSSCSSPARLIHRGVNCKRRRPKVLLVQPRRVDCDFESVALLLGMSFAAFVSQVFERQDMSSERMSVDHLSMICTSAIRESLVNVFGDKLDWFLKKFEKSFGSTLRTLRSISESSARTGVNFSSKRKEENITVDLTPDRKRDGTSSSSLEESSRTDAPVDQLSLIEEVNESVSDSLGRELALCRLTDDVPSIAPRPVGCHSNEVSVGTFERSVVEQARSNDLRTLEFGLALRKLKLKETQIALNCELNNLERSKLAMGISKASFKAEKFKNQLEDTRQSELLKNCRDCLVAGFLIMLVALSYGAYVYSYQRISEATSICTPTQDSKSWWMPNPMASLNSGWHMLRCQVQVVSRLAFGGIMILAIAYLLIQRSATSNQAMPVTFIVLLLGVACGLAGKFCIDTLGGSGLHWLMFWEIMCSMHLCANLFTSALFLILQGPVEVSQGKNRHSILPYWIRRAVFYALLLVFLPLLCGLIPFAGVGAWKDHFFLLNEKKVHTGAGLPVLKNWEPLQRDLLLLSEEVMTGRGPSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGSKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPFFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLHDAVDRHGAMGWGATSDRGRGSEFEFEKFESGAVKAWEGERIHEVGVDDLELTLGGGKARYPGSPSCKTLNSLLQLVVEEQSKFESRPRKGHHSLLENEKNNAIVMVIYFSFPLGVLSIFFQDRMVLRVEIAHLYQTFLNVIETNNQLWGKNCYEHCPFSSCGSLVGWCPSLLCSVVPVDLCVLLFFRRLFTYRPINSATASQNDQ 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6022602 6029709 - CmaCh03G007750.1 Cma03g00775 290346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00775 1068 MobiDBLite consensus disorder prediction 675 713 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 214 243 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 214 230 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 759 775 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 606 628 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 40 55 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 759 783 - -
Cma03g00775 1068 PANTHER PROTEIN CPR-5 56 574 IPR044708 GO:0006952|GO:0010090|GO:0010150
Cma03g00775 1068 MobiDBLite consensus disorder prediction 691 713 - -
Cma03g00775 1068 Pfam BES1/BZR1 plant transcription factor, N-terminal 611 733 IPR008540 -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 31 67 - -
Cma03g00775 1068 MobiDBLite consensus disorder prediction 614 628 - -
Cma03g00775 1068 PANTHER PROTEIN CPR-5 56 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00775 - - - bhj:120074312 848.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00775 Cma07g00508 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00775 Cma-Chr3:6022602 Cma12g00489 Cma-Chr12:2541382 8.61E-80 dispersed
Cma07g00509 Cma-Chr7:2200883 Cma03g00775 Cma-Chr3:6022602 0 transposed
Cma03g00775 Cma-Chr3:6022602 Cma05g00226 Cma-Chr5:963953 4.53E-80 wgd
Cma03g00775 Cma-Chr3:6022602 Cma07g00508 Cma-Chr7:2196728 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
Vvi7g1142 . . . . . . Bma09g00059 . Cmo03g00807 Cmo07g00507 . . . . . Cpe19g00792 . Bhi03g01257 . . . . . . . . . . . . . . . . . Lsi01g00706 Csa06g03210 . Cme08g00819 . . . . . . . . . . . Cma03g00775 . Car03g00705 Car07g00445 Cpe10g00588 . . . . . . . . . . . . . . . . . Chy02g00675 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G75080 59.2 2.1e-81 300.1
Cma03g00775 CST 632 922 BZR Transcription Factor Family AT1G75080 58.4 1.6e-78 290.4
Cma07g00508 CST 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.6e-78 289.3
Cma05g00226 CST 33 298 BZR Transcription Factor Family AT1G75080 61.6 4.8e-78 288.9
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G19350 57.0 3.6e-78 289.3
Cma03g00775 CST 632 921 BZR Transcription Factor Family AT1G19350 59.2 4.7e-78 288.9
Cma07g00508 CST 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.4e-77 287.3
Cma05g00226 CST 33 299 BZR Transcription Factor Family AT1G19350 60.3 3.1e-77 286.2
Cma03g00775 CST 611 917 BZR Transcription Factor Family AT3G50750 57.9 2.1e-76 283.1
Cma07g00508 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 2.8e-76 282.7
Cma05g00226 CST 1 293 BZR Transcription Factor Family AT3G50750 50.5 6.5e-57 218.4
Cma04g00664 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 2.2e-49 193.0
Cma18g00433 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.4e-48 190.3
Cma16g00431 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 9.2e-48 187.6
Cma04g00664 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cma16g00431 . 1 325 BZR Transcription Factor Family AT1G78700 71.0 1.3e-112 403.7
Cma18g00433 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 4.1e-103 372.1
Cma13g00580 CST 1 342 BZR Transcription Factor Family AT1G78700 65.2 2.0e-102 369.8
Cma03g00775 CST 632 804 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cma07g00508 CST 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.7e-60 229.6
Cma05g00226 CST 33 197 BZR Transcription Factor Family AT4G36780 56.5 7.2e-37 151.8
Cma12g00489 . 57 228 BZR Transcription Factor Family AT4G36780 56.2 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005132 1 3 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34645 PF05687 BES1_N 1.40E-62 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00775 Cma_Chr03 FPKM 18.930483 20.847893 24.538027 24.361713 29.574812 27.146544 29.522142 25.324881 27.281393 23.789829