Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00776 ATGGCTAATTCCCTGCCTTTACCTGAACTCGTTTTCATCTCACCGAAGCGCCTTCTATCTTCTTCCAGTCCCAGTTCTTCGCTCAATAGGATTCCTTTTTCTAGAAGTTGTAGGCTTAGTGTTCTTCTTCGCACGAAGGTCCGAGCTGTCAGAGAAAACGGTGTGGTTGCTGAAGGGAGGGAGAATCAACTGAGCAAGGAAGTTAATGGATATGGACTTGGAAGTAACGGAGCTGCTTACAGTGCGAATGGTAGTTACAGGGATAATGGTTGGGTTAATGGCGGAGTTACGGTTATGGAGAGTGAGAGTGGTGGAAACAATGGGAGATTAGTGAAGTATGTTAATGGAAATGGTGTTGCTGCGACGGTGGTGGGGGAAATTCAAGCTTCGAAGTCGATGGAGGAGGGGAGGAAGAAGAGGATAGAGGAGATTGGTAAAGAAGAGGCTTGGTTTAAGCGGAGTGACCAGCAACAGGTCGAGGTGTCTGTGGCGCCCGGTGGACGCTGGAATAGATTTAAAACATATTCCACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTACTTTTATCACTAAGGCTTGGCTTAACAATCAGAAATTTACTTATCGAGGAGGAATGACAGAAGAGAAGAAGGTTGCAAGAAGAAAGATCCAAGCTAAGTGGTTGAAAGAAAACATTTTAAGATTAGGTCCAACGTTTATTAAAATTGGCCAGCAATTTTCCACAAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTGTCAGAGCTTCAGGATCAAGTTCCTCCCTTCCCATCTGAGACAGCAATATCAATAGTTGAAGAAGAGCTTGGAGGTCCTTTGGCCAATATATTTGATCAGTTTGACCATGAACCGATAGCTGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAGGTTGTGGTGAAAGTGCAAAGGCCAAGTCTAAAGGAACTCTTTGATATTGATCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAGAAAATTGACCCAAAGTCAGATGGTGCAAAGAGAGACTGGGTTGCTATATATGATGAGTGTGCTAATGTCCTGTATCAGGAGATAGACTACACCAAGGAAGCAGCTAATGCTGAGCGGTTTGCAAGCAACTTTAAAAACTTGGACTATGTGAAAGTCCCATCAATATTATGGGACTATACTACCCCACAGATTCTGACTATGGAGTATGTTCCTGGAATTAAAATAAATAAAATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGGTTAGGTCGTTATGTCGTTGAATCTTACCTGGAGCAAATTCTGTCTCATGGATTCTTCCATGCAGATCCTCATCCTGGGAATATTGCTGTCGATGACGTCAATGGAGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGTATCAGTTCAAATATCAGAGAGGGTTTGTTGGAAACGTTCTATGGAGTGTATGAGAAAGATCCAGACAGGGTTCTTCAAGCAATGGTTCAAATGGGAGTTCTTGTGCCTACTGGAGATATGACGGCTGTTAAACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTCTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAGCTTGGTTTTAAGAAACCATTGACAAAGGAGGAAAAGTTGATGAAAAAAAAGGAACGCCTAGCTGCAATTGGGGAAGATCTATTAGCCATTTCAGCAGATCAACCATTTCGGTTTCCTGCCACATTCACATTTGTTGTTAGAGCATTTTCAGTACTAGACGGCATTGGGAAGGGCCTTGACCCACGATTTGATATTACTGAAATTGCCAAACCATATGCTCTGGAATTATTGAAGTTTCGGGAAGCCGGAATTGAAGTTGCCTTGAAGGATTTCAGAAAGAGATGGGACAGGCAGGCTCGTGCATTCTATAACTTATTTAGACAGGCCGAAAGAGTTGAAAAACTTGCTGAAATTATCCAAAGACTGGAGAAAGGTGATCTCAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGAGCGTTCCAACGTGTTGCAACAGTTCAGAAGACGCTAGGAAATGCTATAGCTGCTGGAAGTCTAATCAACCTTGCAACAATATTATATATCAATTCGATTCGAACGCCTGCCACTATTGCGTACATCTTTTGTGCCTTTTTCGGGTTTCAAGTGCTCTTCGGTCTTATCAAGGTCAAAAGATTAGATGAACGGGAGAGGTTGATAACAGGGACGGCTTGA 2286 42.91 MANSLPLPELVFISPKRLLSSSSPSSSLNRIPFSRSCRLSVLLRTKVRAVRENGVVAEGRENQLSKEVNGYGLGSNGAAYSANGSYRDNGWVNGGVTVMESESGGNNGRLVKYVNGNGVAATVVGEIQASKSMEEGRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFTFITKAWLNNQKFTYRGGMTEEKKVARRKIQAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAISIVEEELGGPLANIFDQFDHEPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAERFASNFKNLDYVKVPSILWDYTTPQILTMEYVPGIKINKIKALDQLGIDRKRLGRYVVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDRVLQAMVQMGVLVPTGDMTAVKRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAISADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGIEVALKDFRKRWDRQARAFYNLFRQAERVEKLAEIIQRLEKGDLKLRVRALESERAFQRVATVQKTLGNAIAAGSLINLATILYINSIRTPATIAYIFCAFFGFQVLFGLIKVKRLDERERLITGTA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6032070 6039764 + CmaCh03G007760.1 Cma03g00776 290347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00776 761 PANTHER ABC TRANSPORTER-LIKE PROTEIN 4 759 - -
Cma03g00776 761 Coils Coil 531 551 - -
Cma03g00776 761 SUPERFAMILY Protein kinase-like (PK-like) 261 502 IPR011009 -
Cma03g00776 761 CDD ABC1_ADCK3-like 260 508 - -
Cma03g00776 761 Pfam ABC1 atypical kinase-like domain 259 507 IPR004147 -
Cma03g00776 761 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 4 759 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00776 - - - csv:101215926 1355.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00397 Cma-Chr1:2010216 Cma03g00776 Cma-Chr3:6032070 5.19E-53 dispersed
Cma03g00776 Cma-Chr3:6032070 Cma20g00687 Cma-Chr20:3145376 3.95E-174 dispersed
Cma09g00545 Cma-Chr9:2456786 Cma03g00776 Cma-Chr3:6032070 4.05E-43 dispersed
Cma12g00376 Cma-Chr12:1939311 Cma03g00776 Cma-Chr3:6032070 1.26E-32 dispersed
Cma13g00782 Cma-Chr13:6722564 Cma03g00776 Cma-Chr3:6032070 3.91E-39 dispersed
Cma04g01912 Cma-Chr4:10131393 Cma03g00776 Cma-Chr3:6032070 5.85E-27 transposed
Cma12g00375 Cma-Chr12:1936926 Cma03g00776 Cma-Chr3:6032070 1.08E-24 transposed
Cma05g00634 Cma-Chr5:3181475 Cma03g00776 Cma-Chr3:6032070 1.88E-63 transposed
Cma08g01034 Cma-Chr8:6463423 Cma03g00776 Cma-Chr3:6032070 6.19E-58 transposed
Cma03g00776 Cma-Chr3:6032070 Cma07g00510 Cma-Chr7:2206266 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g894 . . . . . . . . . . Cma03g00776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00808 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi7g1137 . . . . . . . . . Cmo07g00508 . . . . Sed14g1089 Cpe19g00791 . Bhi03g01256 Tan03g1945 Cmetu10g0647 . Hepe04g1480 . . . . . . . . . . . . . . . . Cme08g00817 . . Bda11g01879 Bda14g01020 . . . . . . . Cma03g00776 . Car03g00706 Car07g00447 Cpe10g00587 . . . . . . . . . . . . . . . . . Chy02g00677 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00776 Cma_Chr03 FPKM 4.283902 3.567897 4.208519 4.489902 27.566412 24.593508 29.46875 7.769707 7.105906 8.145162