Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00789 | ATGTTGGAAGGGTTTGCTTTTGCTCATTGTACCACATGTAAGGCCCCTTACCACTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTGTATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACGCATTTTGTAGATGGTTTTCAACATTACTGGCTTCGTCTTACGTGGGGTTTTGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAGCCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCAGGACTATGTGCTGACTGTCATTTGCCTGGTACTCTTTGTATGTGGACTGACTGCACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTCATTGGTATCTTCTACAGCGTCTTGGTAGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGCTTACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCGGAGTGGTTACCTCCACCACTTCCAGCTGAGCACGTTCAACAACTGAAAAATCTTGGCCTTTTATGA | 765 | 41.7 | MLEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIVFIFLAVQLVIASLGYLTHFVDGFQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWLPPPLPAEHVQQLKNLGLL | 254 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6088094 | 6091549 | + | CmaCh03G007890.1 | Cma03g00789 | 290360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00789 | 254 | PANTHER | - | 3 | 254 | - | - | |
| Cma03g00789 | 254 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 254 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00789 | Cma-Chr3:6088094 | Cma14g01188 | Cma-Chr14:9513675 | 1.87E-11 | dispersed | |
| Cma03g00789 | Cma-Chr3:6088094 | Cma11g00552 | Cma-Chr11:2665204 | 5.81E-45 | transposed | |
| Cma03g00789 | Cma-Chr3:6088094 | Cma10g00580 | Cma-Chr10:2653003 | 1.33E-44 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00789 | - | - | csv:101214008 | 503.442 |