Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00834 ATGGCGGATGCTTTTTACTGTTGTACACACAACAACGCCAATACTTGTTTTGATGATCAATTTGATTGTAATGCAACAAATAATAAGGTTGAGCAATGCTCAATTTTTCTGCCCCACCCCCATGTTGTTGCCTGTTTCGGATCCCATACTTTGCTGGGTTTTGCTTTACAGAGCGAAGAGAGGGTGAGAGGAATGGTGGAAAAGGAGATTCAGCATTTGCCCACCCATGATTATATTAAGAGACTGCGCAGTGGGGATTTGGATTTGAAGTTTAGGAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTCACTCTTTGTCTATCTTTAAACTACTTGGACCGTTTCCTCTCAGTGTATCACTTGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCTGTTGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTACCACTGTCCATTGATTTACAGGTGGAGGAGCCTAAGTTTGTGTTCGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCATGCCATAACTCCATTTTCTTTCATTGATTATTTCGTTAGTAAGATGGGTGTTGGAGAGCACGTAGCGAGGGTATCCTTGTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTTTAGCTGTGGCAATTTCCACTTCAGGAGAATTGCAAGCATCCGACGTCAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGGGTGATGAAGTGCATCGATCTGATCAGAGATGTATCGTTGTTTAGTAATGTAAATACATTGGTTGCTGATAATGTTGCTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTGTTGGATGCAGCTTGTTTGAGCCAAAAACAGAAGAACTATTAA 969 42.11 MADAFYCCTHNNANTCFDDQFDCNATNNKVEQCSIFLPHPHVVACFGSHTLLGFALQSEERVRGMVEKEIQHLPTHDYIKRLRSGDLDLKFRREALDWIWKAHAHYSFGPLTLCLSLNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLSIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMHAITPFSFIDYFVSKMGVGEHVARVSLSKSSQLILSTIKGIDFLEFRPSEIALAVAISTSGELQASDVNKAILSFPYMEKERVMKCIDLIRDVSLFSNVNTLVADNVAGSVPQSPVGVLDAACLSQKQKNY 322
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 6287640 6289451 - CmaCh03G008340.1 Cma03g00834 290405
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00834 322 SMART Cyclin_C_2 194 304 IPR004367 -
Cma03g00834 322 CDD CYCLIN 92 184 IPR013763 -
Cma03g00834 322 Pfam Cyclin, C-terminal domain 194 288 IPR004367 -
Cma03g00834 322 PANTHER CYCLINS 53 315 IPR039361 -
Cma03g00834 322 Gene3D - 65 279 - -
Cma03g00834 322 PANTHER CYCLIN-D4-1-LIKE 53 315 - -
Cma03g00834 322 Gene3D - 75 192 - -
Cma03g00834 322 SUPERFAMILY Cyclin-like 55 192 IPR036915 -
Cma03g00834 322 SMART cyclin_7 97 185 IPR013763 -
Cma03g00834 322 Pfam Cyclin, N-terminal domain 65 191 IPR006671 -
Cma03g00834 322 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01813 Cma-Chr1:12047797 Cma03g00834 Cma-Chr3:6287640 5.24E-47 dispersed
Cma02g00134 Cma-Chr2:646280 Cma03g00834 Cma-Chr3:6287640 7.38E-40 dispersed
Cma03g00834 Cma-Chr3:6287640 Cma16g00310 Cma-Chr16:1444756 1.41E-62 dispersed
Cma07g00683 Cma-Chr7:3002281 Cma03g00834 Cma-Chr3:6287640 4.84E-46 dispersed
Cma09g00261 Cma-Chr9:1092895 Cma03g00834 Cma-Chr3:6287640 1.07E-49 dispersed
Cma11g01728 Cma-Chr11:11487243 Cma03g00834 Cma-Chr3:6287640 8.54E-49 dispersed
Cma19g00585 Cma-Chr19:6507822 Cma03g00834 Cma-Chr3:6287640 1.14E-45 dispersed
Cma20g00655 Cma-Chr20:3024546 Cma03g00834 Cma-Chr3:6287640 3.20E-36 dispersed
Cma12g00214 Cma-Chr12:1052341 Cma03g00834 Cma-Chr3:6287640 2.99E-87 wgd
Cma03g00834 Cma-Chr3:6287640 Cma05g00530 Cma-Chr5:2535606 1.29E-85 wgd
Cma03g00834 Cma-Chr3:6287640 Cma07g00564 Cma-Chr7:2439307 8.42E-165 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00834 K18810 - csv:101209378 463.381