Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00834 | ATGGCGGATGCTTTTTACTGTTGTACACACAACAACGCCAATACTTGTTTTGATGATCAATTTGATTGTAATGCAACAAATAATAAGGTTGAGCAATGCTCAATTTTTCTGCCCCACCCCCATGTTGTTGCCTGTTTCGGATCCCATACTTTGCTGGGTTTTGCTTTACAGAGCGAAGAGAGGGTGAGAGGAATGGTGGAAAAGGAGATTCAGCATTTGCCCACCCATGATTATATTAAGAGACTGCGCAGTGGGGATTTGGATTTGAAGTTTAGGAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTCACTCTTTGTCTATCTTTAAACTACTTGGACCGTTTCCTCTCAGTGTATCACTTGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCTGTTGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTACCACTGTCCATTGATTTACAGGTGGAGGAGCCTAAGTTTGTGTTCGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCATGCCATAACTCCATTTTCTTTCATTGATTATTTCGTTAGTAAGATGGGTGTTGGAGAGCACGTAGCGAGGGTATCCTTGTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTTTAGCTGTGGCAATTTCCACTTCAGGAGAATTGCAAGCATCCGACGTCAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGGGTGATGAAGTGCATCGATCTGATCAGAGATGTATCGTTGTTTAGTAATGTAAATACATTGGTTGCTGATAATGTTGCTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTGTTGGATGCAGCTTGTTTGAGCCAAAAACAGAAGAACTATTAA | 969 | 42.11 | MADAFYCCTHNNANTCFDDQFDCNATNNKVEQCSIFLPHPHVVACFGSHTLLGFALQSEERVRGMVEKEIQHLPTHDYIKRLRSGDLDLKFRREALDWIWKAHAHYSFGPLTLCLSLNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLSIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMHAITPFSFIDYFVSKMGVGEHVARVSLSKSSQLILSTIKGIDFLEFRPSEIALAVAISTSGELQASDVNKAILSFPYMEKERVMKCIDLIRDVSLFSNVNTLVADNVAGSVPQSPVGVLDAACLSQKQKNY | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6287640 | 6289451 | - | CmaCh03G008340.1 | Cma03g00834 | 290405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00834 | 322 | SMART | Cyclin_C_2 | 194 | 304 | IPR004367 | - | |
| Cma03g00834 | 322 | CDD | CYCLIN | 92 | 184 | IPR013763 | - | |
| Cma03g00834 | 322 | Pfam | Cyclin, C-terminal domain | 194 | 288 | IPR004367 | - | |
| Cma03g00834 | 322 | PANTHER | CYCLINS | 53 | 315 | IPR039361 | - | |
| Cma03g00834 | 322 | Gene3D | - | 65 | 279 | - | - | |
| Cma03g00834 | 322 | PANTHER | CYCLIN-D4-1-LIKE | 53 | 315 | - | - | |
| Cma03g00834 | 322 | Gene3D | - | 75 | 192 | - | - | |
| Cma03g00834 | 322 | SUPERFAMILY | Cyclin-like | 55 | 192 | IPR036915 | - | |
| Cma03g00834 | 322 | SMART | cyclin_7 | 97 | 185 | IPR013763 | - | |
| Cma03g00834 | 322 | Pfam | Cyclin, N-terminal domain | 65 | 191 | IPR006671 | - | |
| Cma03g00834 | 322 | ProSitePatterns | Cyclins signature. | 92 | 123 | IPR006671 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01813 | Cma-Chr1:12047797 | Cma03g00834 | Cma-Chr3:6287640 | 5.24E-47 | dispersed | |
| Cma02g00134 | Cma-Chr2:646280 | Cma03g00834 | Cma-Chr3:6287640 | 7.38E-40 | dispersed | |
| Cma03g00834 | Cma-Chr3:6287640 | Cma16g00310 | Cma-Chr16:1444756 | 1.41E-62 | dispersed | |
| Cma07g00683 | Cma-Chr7:3002281 | Cma03g00834 | Cma-Chr3:6287640 | 4.84E-46 | dispersed | |
| Cma09g00261 | Cma-Chr9:1092895 | Cma03g00834 | Cma-Chr3:6287640 | 1.07E-49 | dispersed | |
| Cma11g01728 | Cma-Chr11:11487243 | Cma03g00834 | Cma-Chr3:6287640 | 8.54E-49 | dispersed | |
| Cma19g00585 | Cma-Chr19:6507822 | Cma03g00834 | Cma-Chr3:6287640 | 1.14E-45 | dispersed | |
| Cma20g00655 | Cma-Chr20:3024546 | Cma03g00834 | Cma-Chr3:6287640 | 3.20E-36 | dispersed | |
| Cma12g00214 | Cma-Chr12:1052341 | Cma03g00834 | Cma-Chr3:6287640 | 2.99E-87 | wgd | |
| Cma03g00834 | Cma-Chr3:6287640 | Cma05g00530 | Cma-Chr5:2535606 | 1.29E-85 | wgd | |
| Cma03g00834 | Cma-Chr3:6287640 | Cma07g00564 | Cma-Chr7:2439307 | 8.42E-165 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00834 | K18810 | - | csv:101209378 | 463.381 |