Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00842 ATGGCGAAAGAGAGATTCCAGATCAGGAAGATCGATAACGCTACTGCGAGACAAGTCACCTTCTCCAAGCGCCGGAGGGGACTGTTTAAGAAAGCAAAAGAGCTATCCGTTCTATGCGATGCTGATGTCGCCCTCATTGTCTTCTCCGCTACCGGAAAGCTGTTTGAGTTCTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGACTAAACAAGGAAATTGCTGAGAAAACTCAGCAGCTAAGGCAGATGAGGGGAGAAGAGCTCCAAACATTGAATATAGAGGAACTCCAGCAGCTAGAGAAGTCACTGGAGTGTGGATTGAGCCGTGTGATGGAGAAAAAGGGCGAACGAATCATGACAGAAATATCTGATCTTCAAAGAAAGTCGGCTGAGTTGATGGAAGAGAATAGGCGACTGAAACAAGCGCAAAAAATGAATTGCGTGAGGAACCTTGGCGTTGAGCCGGAGAATTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGATAGCTCAGACACATCTCTGAAACTAGGACTGGTCAAGTTTTATATGATCGAGTGGACCCAATGGTTGCAGGCTGCCGTATTCCGGGTGACGGCGACGGTAATGGCGATCGGGAAGATGAACACGTACTGCAGCTAG 774 47.8 MAKERFQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIVFSATGKLFEFSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTQQLRQMRGEELQTLNIEELQQLEKSLECGLSRVMEKKGERIMTEISDLQRKSAELMEENRRLKQAQKMNCVRNLGVEPENLVVEDGQSSNSVTEACVSNSNGPPQDLDSSDTSLKLGLVKFYMIEWTQWLQAAVFRVTATVMAIGKMNTYCS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6328471 6331473 + CmaCh03G008420.1 Cma03g00842 290413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00842 257 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cma03g00842 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Cma03g00842 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma03g00842 257 Coils Coil 143 173 - -
Cma03g00842 257 MobiDBLite consensus disorder prediction 189 214 - -
Cma03g00842 257 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00842 257 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Cma03g00842 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma03g00842 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma03g00842 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma03g00842 257 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00842 257 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 224 - -
Cma03g00842 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma03g00842 257 Coils Coil 94 114 - -
Cma03g00842 257 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cma03g00842 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00842 Cma-Chr3:6328471 Cma12g00198 Cma-Chr12:922037 1.42E-74 dispersed
Cma16g00276 Cma-Chr16:1285453 Cma03g00842 Cma-Chr3:6328471 6.08E-54 wgd
Cma19g00475 Cma-Chr19:5685284 Cma03g00842 Cma-Chr3:6328471 1.75E-66 wgd
Cma03g00842 Cma-Chr3:6328471 Cma07g00570 Cma-Chr7:2477419 1.69E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34649 PF01486 K-box 4.40E-16 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00842 - - csv:101203152 394.045