Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00850 ATGGGTACTCAAAGTCAAACAGGATTGGTTGCACACAAGAAGATGCTTCCTCCTCAACCGGGAAGATTTGATGATCGTGAAGATCTCATTAAATATGTTCGTGACTTTGGTGCTGATCAGGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTCTGTACCGTAACAGGCGTAAGATTGACGAGAGTCGGCGCAAAAGGAAAGCTAGCTCACGCTTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCACGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCCGTTTTACTGAGGATGAAGTAAGGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGCCAAGTGCTTAAAGCTCTCAAACAACATAATCCAGATTTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCCAAAATTCGACAAGGAAATCTATCAGAAAAGAATTTCAAGTCATGGAGACCTAATATTTCACTTCATGCAAATAGTAGTCATACTGTTATTGGGGATACGGTCAAGCAAACGCATCAGCTGATGGTTCCTAATTTAATTGGAGGGGAGTTCTTAGATTCGCACAACTGTCCAGTGGTTGATGTTATCAATCCAGCAACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTATGAAGAGTTTAAGGCCGCAGTTAATGCAGCCAAACAAGCCTTTCCCTCATGGAAAAACACACCGATTTCTACTCGTCAATGTGTTATGTTTAAGTTCCAGGAGCTCATCCTCAGAGACATGGATAAGCTTGTGACAAATATTGTCACAGAACAGGGAAAAACATTAAAGGATGCTCAAAATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGTTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCGTCCCTAATGCATCTGATGGAATTGACTCGTATTGCATCCGAGATCCAATAGGTGTTTGTGCTGGGATCTGCTCTTTTAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGGTTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAACATACCCGGGGGCTTCAATGTTGCTAGCTGCATTAGCAGTGGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGAGATCATAAACTATATATGTGACGATGGGGACATAAAAGCCATATCTTTTGCCAGTTCATGTTCTGCTGGAAAGAACATATATGCTAGGGCCGCTGCTACGGGAAAGCAAGTTCAGTCTCACTTAGGAGGCAAGAGCCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAATGCTCTGGTTGATGCTGGATTCGGTACTTCTGGACAGACATGTATGGCTATCAACATTGTTGTCTCCGTTGGGAGTTCAATTCTATGGGAAAAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAATTACCAAAGAGGTGAAAGATCGTTTTTGTAGATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGACTTCTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACGGACATGGAGTGCTACAAGCATTCTGGTACATTAATTTTAACAGCAATATTTTGTGTCGTCAGGAAGAATTTCTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAG 1854 41.91 MGTQSQTGLVAHKKMLPPQPGRFDDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGLYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRRFTEDEVRQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISLHANSSHTVIGDTVKQTHQLMVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWKNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLKDAQNDIICGLEVVKHVCGLATMQMGEFVPNASDGIDSYCIRDPIGVCAGICSFNHPATVSLWMFPVAVTCGNTFVLKPCETYPGASMLLAALAVEAGLPDGVLNIVHGTHEIINYICDDGDIKAISFASSCSAGKNIYARAAATGKQVQSHLGGKSHAIIMPDANMEATLNALVDAGFGTSGQTCMAINIVVSVGSSILWEKKLVECAKALKVNVGTDPNADLGPVITKEVKDRFCRLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKHSGTLILTAIFCVVRKNFLDQFSFVCRLTT 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6357351 6365106 - CmaCh03G008500.1 Cma03g00850 290421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00850 617 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 482 493 IPR016160 GO:0016491
Cma03g00850 617 Pfam Aldehyde dehydrogenase family 227 587 IPR015590 GO:0016491
Cma03g00850 617 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 457 587 IPR016163 GO:0016620
Cma03g00850 617 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 231 456 IPR016162 GO:0016491
Cma03g00850 617 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 1 588 - -
Cma03g00850 617 SUPERFAMILY ALDH-like 204 587 IPR016161 GO:0016491
Cma03g00850 617 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 588 IPR010061 GO:0004491
Cma03g00850 617 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 214 608 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00850 Cma-Chr3:6357351 Cma11g01675 Cma-Chr11:11016110 0 dispersed
Cma19g00489 Cma-Chr19:5820483 Cma03g00850 Cma-Chr3:6357351 2.39E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00850 K00140 - csv:101207178 1073.92