Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00852 ATGGCGAAATCACCGGCCGAAGAGCACCCTAAGAAGGCTTTTGGATGGGCTGCCAGAGATACCTCCGGCGTTCTTTCTCCATTTAAATTCTCCCGAAGAGAAACAGGGGAAAATGATGTAGCTTTTAAAGTTCTTTACTGTGGGATATGCCATTCTGATCTTCACATGTTGAAAAACGAGTGGGGCAATACCATTTACCCTATTGTTCCTGGGCATGAAATCGCGGGTGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAATTTCAAGGTTGGAGACAGAGTGGGCGTAGGATGTATGGTCGGATCCTGCCGCTCCTGTGATAGCTGTTCCAACGACCTTGAGAACTATTGCCCAAAAATGATTCTCACCTACTCCGCCAAGGACTCCGATGGGACCATAACCTACGGTGGCTACTCCGACTGTATGGTCGCCGACGAGCACTTCATTGTTCGCATTCCTGACAGCATCCCTCTGCACGCCGGGGCTCCGCTGCTTTGCGCTGGTATCACGGTTTACAGCCCCTTGAGATACTATGGACTTGACAAGCCTGGAATGCAAATCGGCGTGGTTGGCCTTGGAGGGCTTGGCCATGTAGCTGTCAAATTTGCTAAGGCCCTTGGCGCTAAGGTCACTGTGATCAGCACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAGATGCAGGCTGCTAAGGGGACGTTGGATGGTATCATAGACACAGTCTCTGCCTCACATCCCCTGCTTCCTCTGCTTTCTCTTGTGAAAACACATGGAAAGTTTGTTCTGGTTGGTGCACCAGAGAAGCCTCTCGAGGTCCCAGCCTTCGCTCTTATTGGGGGTAGGAAAACATTGTCGGGTAGTTGCATTGGAGGGATGAAGGAAACGCAAGAGATGATTGATTTTGCGGCCAAACACAACATAACTGCGGATGTTGAGGTGATTCCGATAGCCGACGTCAACACCGCCATGGAGCGGATGATAAAACAGGATGTCAAATATCGATTCGTCATCGACATTGGCAACACAATGAAGGCTAGCACTTAA 1086 49.91 MAKSPAEEHPKKAFGWAARDTSGVLSPFKFSRRETGENDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIAGEVTEVGSKVKNFKVGDRVGVGCMVGSCRSCDSCSNDLENYCPKMILTYSAKDSDGTITYGGYSDCMVADEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGMQIGVVGLGGLGHVAVKFAKALGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAAKGTLDGIIDTVSASHPLLPLLSLVKTHGKFVLVGAPEKPLEVPAFALIGGRKTLSGSCIGGMKETQEMIDFAAKHNITADVEVIPIADVNTAMERMIKQDVKYRFVIDIGNTMKAST 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6370865 6372722 + CmaCh03G008520.1 Cma03g00852 290423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00852 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cma03g00852 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cma03g00852 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Cma03g00852 361 Gene3D - 16 353 - -
Cma03g00852 361 PANTHER ALDEHYDE REDUCTASE 2 359 - -
Cma03g00852 361 CDD CAD1 14 352 - -
Cma03g00852 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cma03g00852 361 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 359 - -
Cma03g00852 361 Gene3D - 167 323 - -
Cma03g00852 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cma03g00852 361 SUPERFAMILY GroES-like 20 184 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00852 Cma-Chr3:6370865 Cma20g01080 Cma-Chr20:8298392 8.65E-171 dispersed
Cma03g00852 Cma-Chr3:6370865 Cma02g00585 Cma-Chr2:3436313 1.65E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00852 - K23232 csv:101222715 679.093