Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00853 TCATCGACATCGTCGTTGTTCGAAACTGCTACAGCAAAAGGAACAAATGGAGAAGAAAGGCAAGGCAAGAAGGCAGCGCCCATACTGGACCTGGAAACTTGGGTTCTCAGCAATGCCGCTCCTTTTCTTATTCTTCAGTTTAACCCTCGCCCACAAGAATTCCTCCCAACGGTTACAAGAATGGTAAGAAAGTTGGTGAAGAACAATGAATCTATGTTGTCGCGCGATGTAACGGTAGAATGGGAGAATCGTGGACAGGTAGTAATGGACAATGGGTTAGTTCGAATCACTTTATCCAGCCCAGAAGGCAACGTCGTTGCCCTAAAATACAATGCCATTGATAACCTACTTGAAATCCGCAACCCACAATATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAGAGGTAGTGCCACTGACAGAGTAAGGGCGACGGATTTCAAAGTGATTACGGCCACCACCGACCAAATAGAGCTTTCATTCACCAAAACTTGGAATCCTAATTCCCACTCTTCCTGCCCTTTGAACATAGACAAAAGGTATATTCTCCGGCGCGGCGATTCTGGGTTCTATGCATATGCCATATTTGAACGCCTTGATGGATGGCCTCAAATTGACGTTGATCAGATTCGAATGGTCTTCAAAATTCTAGGGAAAAAATTTCATTACATGGTGGTATCGGACGACAGACAGAGGATCATGCCAACGGCAAGGGACCGTGAGACCGGCCATCCTCTGGCTTATCGGGAGGCGGTTCTCTTAACCCAACCCATCAATTCTAACCTTAAAGGGGAGGTGGACGATAAGTACCAGTACTCGCTAGAGAATATGGAGAATAAGGTTCATGGATGGGAGTCGATGAACCCACACGTGGGGTTCTGGATGATCACGCCCAGTGATGAGTTCCGCACGGCGGGGCCCGTCAAGCAAGATCTTACTTCCCACGTTGGCCCCACCACTCTCTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTTTCTATGAGATTTGGAGAGGGAGAGGCATGGAAGAAGGTATTCGGACCGGTCTTCATTTATCTAAACTCGGGTCCGGTCGGTACTGGACCCGGTTTACTTTGGGAAGATGCTAAAAACCAGATGAGGATAGAGACAAGTAGGTGGCCATACAGCTTTGTTGGATCCACAGATTTTCCATCCTCAAACCAAAGAGGAACCGTAAGCGGTCGGTTATTAGTCCGAGATAGACATGCTAAGAAGTGGTTGATGTGGGGCGATTCTGCGTATGTTGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAACAGAAAGCAAGGGATATCAATTTTGGACACGGGCAGATGGGCAAGGATATTTCTCAATCAACAACATAAGGCCTGGAAACTACAATCTATACGCATGGATACCTGGTGTCATCGGTGATTACAAGTACGCCAATGACATCACTGTCACGTTGGGGAGTACTACCCGCCTCGGCTTACTGATATACGACCCTCCAAGACAAGGCCCAACTCTGTGGGAGATTGGCGTCCCAGACCGGACAGCCGCCGAGTTCTATATACCGGATCCCCATCCCACCCTCATGAATCGCTTTTACAACAATTCTGATATCCATACCCCAGATAAGTTTCGACAGTACGGTCTTTGGGAGCGCTACGCCGAATTGTTTCCCCGTCAAGATCTAGTCTACAACGTCGCCACCGATGACTACCGCCGACATTGGTTCTTCGCCCATGTCACCAGAGCCACCCGTTTCGGTACCTACCAAGCAACCACGTGGCAGATTGTGTTTCGTCTTCAAGGGCCCAAACAGAGCGGGAACTATATGCTTCGGTTGGCCTTGGCTTCCACTACCGAGGCGGTGGTCGAAATCCGGTTCAACAACCCGTTGGCCAGACGGGCTCATTTCTTGACCGGGTATTGGGCCTCGGGAAGAGATAACGCCATTGCTAGACATGGGATTCATGGGCTTTATTGGTTATTCAACTTCCAGGTTCCAAGTGGATATTTGGTGGAGGATGAAAACATTATCTATCTTACACAGAGACGACATATGGGACCCTTTCAAGGAGTGATGTACGATTACATACGGTTCGAAGGCGTACAATAA 2124 48.73 SSTSSLFETATAKGTNGEERQGKKAAPILDLETWVLSNAAPFLILQFNPRPQEFLPTVTRMVRKLVKNNESMLSRDVTVEWENRGQVVMDNGLVRITLSSPEGNVVALKYNAIDNLLEIRNPQYNRGYWDVVWNRPNRGSATDRVRATDFKVITATTDQIELSFTKTWNPNSHSSCPLNIDKRYILRRGDSGFYAYAIFERLDGWPQIDVDQIRMVFKILGKKFHYMVVSDDRQRIMPTARDRETGHPLAYREAVLLTQPINSNLKGEVDDKYQYSLENMENKVHGWESMNPHVGFWMITPSDEFRTAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFIYLNSGPVGTGPGLLWEDAKNQMRIETSRWPYSFVGSTDFPSSNQRGTVSGRLLVRDRHAKKWLMWGDSAYVGLAAPGELGSWQTESKGYQFWTRADGQGYFSINNIRPGNYNLYAWIPGVIGDYKYANDITVTLGSTTRLGLLIYDPPRQGPTLWEIGVPDRTAAEFYIPDPHPTLMNRFYNNSDIHTPDKFRQYGLWERYAELFPRQDLVYNVATDDYRRHWFFAHVTRATRFGTYQATTWQIVFRLQGPKQSGNYMLRLALASTTEAVVEIRFNNPLARRAHFLTGYWASGRDNAIARHGIHGLYWLFNFQVPSGYLVEDENIIYLTQRRHMGPFQGVMYDYIRFEGVQ 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6372866 6376495 - CmaCh03G008530.1 Cma03g00853 290424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00853 707 SUPERFAMILY Galactose mutarotase-like 86 363 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cma03g00853 707 Gene3D - 507 703 - -
Cma03g00853 707 Gene3D - 79 367 IPR014718 GO:0030246
Cma03g00853 707 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 81 705 - -
Cma03g00853 707 MobiDBLite consensus disorder prediction 1 16 - -
Cma03g00853 707 Pfam Polysaccharide lyase family 4, domain III 509 702 IPR029411 -
Cma03g00853 707 CDD RGL4_M 400 497 IPR029413 -
Cma03g00853 707 SUPERFAMILY Starch-binding domain-like 398 498 IPR013784 GO:0030246
Cma03g00853 707 Pfam Rhamnogalacturonate lyase family 66 269 IPR010325 -
Cma03g00853 707 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 81 705 - -
Cma03g00853 707 SUPERFAMILY Galactose-binding domain-like 507 704 IPR008979 -
Cma03g00853 707 MobiDBLite consensus disorder prediction 1 23 - -
Cma03g00853 707 CDD RGL4_C 511 704 - -
Cma03g00853 707 Pfam Polysaccharide lyase family 4, domain II 423 496 IPR029413 -
Cma03g00853 707 Gene3D - 397 498 - -
Cma03g00853 707 CDD RGL4_N 86 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00853 Cma-Chr3:6372866 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma03g00853 Cma-Chr3:6372866 Cma04g00857 Cma-Chr4:4387318 0 wgd
Cma03g00853 Cma-Chr3:6372866 Cma07g00583 Cma-Chr7:2520291 0 wgd
Cma03g00853 Cma-Chr3:6372866 Cma09g00597 Cma-Chr9:2782929 9.59E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00853 K18195 - csv:101206696 1038.48