Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00854 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTTATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAAGTTGCTCTCATTATCTTCTCCAGCTCTGGCAAACAGTATGAATTTGCAAGCACTAGCATAGAGTCGGTAATTGAGAAATATAACAGACGAAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCTGATGTCAAGTTATGGCAGAAGGAAGTATCAGGTCTAAGGCAACAACTACTTAACTTGCAGGAGAATAATAGGAAATTAATGGGGGAGCAACTCTATGGTTTGTCAATTAAAGACCTAAACAGTCTCGAGAGCCAATTAGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGAACAGATATTACACGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAACAAAATGTAGAGCTGGCCAATAAAGTAAACCTCTTTTGTCAAGAAAACATGGAATTGCACAGAAAGGTTTACGGGCATGATTCAAGATTAGAGATGAGCGTGGCCACCGGAAACCCGTTGATCCCGTATGGTATTATCAGCGCCGCCGCCGCTGGCCCAATTGGAGGCGATGCCGGCCTGCGTGTGCCAATCCACCTTCAGCTCAGCCCGCGGGAGCAATGA 705 43.97 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVALIIFSSSGKQYEFASTSIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSGLRQQLLNLQENNRKLMGEQLYGLSIKDLNSLESQLEFSLQSIRIKKEQILHDEIKELNRKGILMHQQNVELANKVNLFCQENMELHRKVYGHDSRLEMSVATGNPLIPYGIISAAAAGPIGGDAGLRVPIHLQLSPREQ 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6379767 6381456 + CmaCh03G008540.1 Cma03g00854 290425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00854 234 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Cma03g00854 234 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 206 - -
Cma03g00854 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00854 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 Coils Coil 86 113 - -
Cma03g00854 234 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cma03g00854 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cma03g00854 234 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma03g00854 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma03g00854 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00854 Cma-Chr3:6379767 Cma07g00152 Cma-Chr7:778548 1.17E-44 dispersed
Cma16g00281 Cma-Chr16:1313922 Cma03g00854 Cma-Chr3:6379767 4.76E-69 wgd
Cma03g00854 Cma-Chr3:6379767 Cma04g00409 Cma-Chr4:2097635 1.31E-78 wgd
Cma03g00854 Cma-Chr3:6379767 Cma09g00600 Cma-Chr9:2804731 3.39E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34651 PF01486 K-box 7.60E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00854 K09264 - csv:101206453 377.867