Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00858 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCCACGCCTTGGTCCTCCTCTTATTCAAATGGCTTCAATGATTTCTTCCAAAATACCTGGAATTTCAGTTGTTTTGATGAAAATCCCCAAATGGGTACCTCTATTTCCTCCCATTTTCCCGCTCTCCAAACTGCTACTGATTTTTCCTTCGCCGACCAACACCTCTACGCCAATTTTCTCGAAGGGCTTGCAATGCCGGAGCTCGATTCTTCATCGTACACTAAGAATAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTAATAGGAACAGTGGGTTCCCTCCGGTGGGGATGGAGGAGGAAGAACTTGGGTTTATGGAGGCTGAAGCGGCTCCAAGTGTGTGCAAAGTGGAAATGGAGCAAATGGGTGGGCGTGAAACTAATGATTCCAAAATGGGTGTCGCAGAATCCAGGAAAAGAACCAGTAACAAGGCTAAGAAGATTGAAGGACAGCCGTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCCATGCTCAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACGATCGACTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGATGAATTTGGTTTAGATTCAAATCAGGTGGGCTTCAATGGGATCTCCAAGGAAGGGAAGCCCAATGAAGTTCAAGTGAGAAATTCCCCGAAGTTCGCTATTGAAAAGAGGGAGAGTAAGACTCGAATCGACATTTGCTGTTCGACGAGGCCAGGATTATTGCTGTCCACTGTGAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTGATTAGCTGCTTCAATGATTTCTCGATGCAAGCTTGTTGTTCAGAGGGAAGCGGCGAGAAAGCAGTGGCAAGCTCAGATGATATAAAGGAGGCACTGTTCAGAAACGCAGGATATGGAGGGAAGTGCTTGTAG 1023 44.77 MELSQHGFLEELLASTPWSSSYSNGFNDFFQNTWNFSCFDENPQMGTSISSHFPALQTATDFSFADQHLYANFLEGLAMPELDSSSYTKNNETPPFVSQEEMSNRNSGFPPVGMEEEELGFMEAEAAPSVCKVEMEQMGGRETNDSKMGVAESRKRTSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDEFGLDSNQVGFNGISKEGKPNEVQVRNSPKFAIEKRESKTRIDICCSTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQACCSEGSGEKAVASSDDIKEALFRNAGYGGKCL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6395689 6397785 + CmaCh03G008580.1 Cma03g00858 290429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00858 340 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 340 - -
Cma03g00858 340 MobiDBLite consensus disorder prediction 147 167 - -
Cma03g00858 340 CDD ACT_UUR-ACR-like 266 307 - -
Cma03g00858 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
Cma03g00858 340 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Cma03g00858 340 Gene3D - 167 233 IPR036638 GO:0046983
Cma03g00858 340 SMART finulus 172 221 IPR011598 GO:0046983
Cma03g00858 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 340 - -
Cma03g00858 340 Coils Coil 205 225 - -
Cma03g00858 340 MobiDBLite consensus disorder prediction 138 167 - -
Cma03g00858 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00858 Cma-Chr3:6395689 Cma14g00762 Cma-Chr14:3798446 1.55E-41 dispersed
Cma12g00174 Cma-Chr12:791251 Cma03g00858 Cma-Chr3:6395689 8.53E-81 wgd
Cma03g00858 Cma-Chr3:6395689 Cma05g00563 Cma-Chr5:2765253 1.71E-80 wgd
Cma03g00858 Cma-Chr3:6395689 Cma07g00592 Cma-Chr7:2545979 0 wgd
Cma03g00858 Cma-Chr3:6395689 Cma09g00606 Cma-Chr9:2852285 1.88E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34652 PF00010 HLH 1.90E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00858 - - csv:101205974 583.178