Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00869 ATGCCCATGCGGAAGGAGATTCTGGTGGCCGCATTGGCCGCTACTGCCACTCTGGTAGTCGCCGCCGCCGCGCTGAGGAGATGGAAGCGGAGGAAACAATGGCAGTTGAAGCAAGCACACCGCATTCTCCGCAAATTCGCCCGGGATTGTGCAACTCCCGTACCCAAGCTGTGGCAGATCGCCGATGATTTGGAGTCCGATATGCGGGCCTCCATTGCATCGAATGGAACCCGTGGCAAAGCCACTCTCAAAATGCTCGTCTCCTACGCCGACGCTTTCCCTAATGGAGATGAGGAAGGGTTTTATTATGGAGTTAATTTGCGGGGAACCAATTTCTTGATTTTGTGCGCTCGGCTTGGGGGAAAGAACGCACCCATCTCTGATATTCATCGCGAGGAGATTTCGATCCCTTCCAATGTGATGAGTGGTAATTCTGAGGATCTGTTCGACTTCATTGCTGCGGAGGTTGCAAAATTTGTTTCCGCTCATCCAGAGAATGAAAATGAACCGGTGAAGAGGACGGAGCTGGGCTTTACATTATCATATCCAGTGGATGATGCTGCGGCCACATTGGGAAATGTAATTAAATGGGATAGTTTCTCCGCTGATGACACAGTTGGAAAGAATATGGTGAAAAACATCAACCGGGCTTTGAATAAGCATGGTGTGAACCTTCGTGTCTCTGCAATGGTTGATGATACTGTTGGGAATTTAGCTGGAGGTAGATACTACTGCAGGGACAGTGTTGCTACTATAACTTTAGGCATGGGCACCAATGCTGCTTATATAGAATCAGCACAAGAACTTGCTCACTTAAATGGACCATCACGAACGTCAAGGGAGATGGGAATCAGCATGGAGTGGGGAAATTTCCGTTCACCGCACCTTCCAATAACCGAGTTTGATGCTTGTCTAGATTCTGAAAGTTTAAACCCGGGTAGTCAGGTATTCCAAAAGTTGGTATCAGGAACCTATTTGGGAGAGATTGTGAGAAGAGTCCTGGTAAAAATGGCACAGGAAACATTATTATTTGGGGATCCCGTACCTCCAAAGCTTATGACCCCTTATCTGCTAAGGTCACCTGATATGGCTGCAATGCATCAGGATACTTCAGAAGATCGAGAAGTTGTCAACGAAAAGCTGAAAGAAATTTTTGGGATAACTGATTCTACTCCAATGGCAAGAGAAATTGTTGCTGAGGTGTGCGATGTCGTGTCAGAACGTGCAGCCCGTCTTGCTGGAGCTGGCATTGTGGGGATCGTTAAGAAGCTGGGGAGGATTGAAAACAAAAGAAACATAGTGACAGTGGAAGGTGGGCTTTACGAGCATTACAGGGTGTTTAGAAACTATCTCAATAGTAGCATATGGGAAATGCTTGGAAATGAACTTTCAGACAATGTGATAGTGGAGCATTCTCACGGGGGGTCCGGCGCTGGAGCTGTGAAAATAGACAAACTGATATACTGGAAGTTGTTTTATTGTGGTGATGGTGTAGAGATTGGTGCACATGGTGTAGTCCAACATGAAGTGGCTGTGTTCCTTGGATTGGACGCAATCGCCTGTATATATGTTATATCCACATTTCCCTCTCCTCCTCCCTCTTCACTTGGAAAGGGAAATGGAAAAAGAAATGACCCTTTGGTTACGGATACCTCCCCAGTATGGCGCGTAGCTTTCTTTGTCCTGGAAGGAGGACTGCTTCGTCATTTTGCTACTATCGGGGGACCAATCTGGGAACCAAAAATGGGTTTGGCCTTCGGGTTGGAGTTTGAGCAACCTTATCTCTACAACACACAAACCCACCAACTATTATTACCTCTTTTCATCATCACTCTTCACTCCTTCTTCAACCCACTTACTCTTACCAAAGATCAGCCGGAAAAATTCCACATTTCCCATTCCATCAACAAACCCACAAACAAAATGCGCCTTCTTCTTCCTTTCCTCTGTCTTCTCCAACTCCACATTCACCATTCTCTTTCTGCTGGTGTTTCTGAGTATCGTGCCCTTCTCTCCCTCAAAACCTCCATTACTGGCGACCCCAAATCCTCTCTCTCTTCCTGGAACGCCTCCACCACTCACTGTACTTGGTTTGGGGTCACTTGCGATTTCCGTCGCCATGTCATTGCCTTAGACCTCTCTGGTCTCGGCCTTTCCGGTTCCCTTTCCCCTGATGTTGCCTTTTTAAGATTTCTTACTTGTCTTTCTCTTGCTGCCAATGAGTTTTCTGGTCCAATCCCACTGGAGATTTCTTCACTCTCTTCCCTTCGCTTCCTTAACCTCTCTAATAATGTGTTCGATGGATCGTTCCCTTCGCGGCTTTCAGAGCTCCAGAATCTGCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTCCCCGTTGTGGTCACTGAAATGTTGAGCCTTCGCCATTTGCATTTGGGTGGAAATTTCTTTACTGGACGGATCCCGTCGGAGGTTGGTCGGCTGCAGTCTTTGGAGTACTTGGCGGTTTCCGGTAACGAACTTGGCGGTCCGATACCGCCCGAGATTGGAAACTTGAAGAACCTTCGAGAGCTCTACATTGGCTACTTTAACGCCTACGACGGCGGTATTCCGGCCGAGATTGGGAATTTGTCGGAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGACGGATTCCGCCGGAGCTCGGAAAGCTGAAGAGCCTTGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCACTGACGCCGGAGATTGGAAAGTTGAACAACTTGAAGTCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGTATCGTTCGCGGAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGAGGGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGGAAGAACGGAATGCTTCGGATTCTGGATATTTCTTCCAACAAGCTGACTGGAACTCTCCCTCCTGATGTGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTTTTGTTCGGTCCAATTCCAGAATCGCTAGGCAAATGCGTTTCACTTAATCGTATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCGAAGGGGCTTCTGAGTCTGCCCAAGCTCTCTCAGGTGGAGTTACAGGACAATTTTCTCTCCGGCGAATTCCCAATAACCGACTCAATCTCAAAGAATCTCGGCCAGATTAGTCTCTCGAACAACCGACTCACTGGGTCGATTCCACCTACAATCGCCAACTTCTCTGGCGTCCAGAAACTACTTCTCGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTTTCGAAGGTTGATTTCAGTAACAATAAGTTGTCGGGTCCAATCGCGCCGGAGATTAGCCAATGCAAGCTTCTAACCTTCGCCGATCTCAGTCGAAACGAGCTCTCGGGAGAAATTCCGAACGAGATTACCAGTATGAGGATATTAAATTACCTGAATCTCTCAAGAAACCATTTAGTCGGCGGAATCCCTGCTTCCATAGCCAGAATGCAGAGTTTAACCTCTGTGGATTTCTCATACAACAACCTCTCTGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATCATACCTCGTTTGTGGGCAATCCCGATCTCTGCGGACCATATTTGGGGCCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACGCTTAAAGGGCCCTCTCTTTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGCTAAAAAAAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTACACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGGAGGCATTGTCTATAAAGGGGTGATGCCAAGTGGAGACCATGTCGCCGTCAAAAGGCTGCCAGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACGAACTCTTGGGAGGATTCGACACCGACATATCGTTAGACTATTGGGGTTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTATATGCCTAATGGGAGCTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAATGGGATACAAGGTACAAGATTGCTATTGAAGCCGCTAAAGGGCTTTGCTATCTCCACCACGATTGCTCGCCACTCATTGTTCATCGCGATGTGAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTCGCTGATTTTGGTCTGGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCTATTGCTGGTTCTTATGGATATATTGCCCCAGAATATGCCTACACACTAAAAGTCGACGAGAAGAGTGATGTATATAGCTTTGGAGTCGTCTTATTGGAGCTTGTTAGTGGAAGAAAATCGGTCGGAGAATTTGGTGATGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTTGATCCAAGGCTCTCCTCCATTCCTCGCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTTGAGGAACAGGCGGTAGAGCGCCCGACAATGCGAGAAGTGATCCAAATCCTATTGGAGATTCCACAGCCACCATGTTCAAAACGGGAAGACTCAACACTCCCCAACTCCTCACCACCACCAACACCAGCATTAGCCGCCGCATTAGACATTCAAACAACAGGACCCGAGAACCAAAAAGACCAGCAGCAGCAGCAGCAGCCGCCAGCAGATCTTCTTAGCACTTGA 4977 47.18 MPMRKEILVAALAATATLVVAAAALRRWKRRKQWQLKQAHRILRKFARDCATPVPKLWQIADDLESDMRASIASNGTRGKATLKMLVSYADAFPNGDEEGFYYGVNLRGTNFLILCARLGGKNAPISDIHREEISIPSNVMSGNSEDLFDFIAAEVAKFVSAHPENENEPVKRTELGFTLSYPVDDAAATLGNVIKWDSFSADDTVGKNMVKNINRALNKHGVNLRVSAMVDDTVGNLAGGRYYCRDSVATITLGMGTNAAYIESAQELAHLNGPSRTSREMGISMEWGNFRSPHLPITEFDACLDSESLNPGSQVFQKLVSGTYLGEIVRRVLVKMAQETLLFGDPVPPKLMTPYLLRSPDMAAMHQDTSEDREVVNEKLKEIFGITDSTPMAREIVAEVCDVVSERAARLAGAGIVGIVKKLGRIENKRNIVTVEGGLYEHYRVFRNYLNSSIWEMLGNELSDNVIVEHSHGGSGAGAVKIDKLIYWKLFYCGDGVEIGAHGVVQHEVAVFLGLDAIACIYVISTFPSPPPSSLGKGNGKRNDPLVTDTSPVWRVAFFVLEGGLLRHFATIGGPIWEPKMGLAFGLEFEQPYLYNTQTHQLLLPLFIITLHSFFNPLTLTKDQPEKFHISHSINKPTNKMRLLLPFLCLLQLHIHHSLSAGVSEYRALLSLKTSITGDPKSSLSSWNASTTHCTWFGVTCDFRRHVIALDLSGLGLSGSLSPDVAFLRFLTCLSLAANEFSGPIPLEISSLSSLRFLNLSNNVFDGSFPSRLSELQNLQVLDLYNNNMTGDFPVVVTEMLSLRHLHLGGNFFTGRIPSEVGRLQSLEYLAVSGNELGGPIPPEIGNLKNLRELYIGYFNAYDGGIPAEIGNLSELVRLDAANCGLSGRIPPELGKLKSLDTLFLQVNALSGPLTPEIGKLNNLKSLDLSNNMLVGEIPVSFAELKNLTLLNLFRNKLHGGIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLRILDISSNKLTGTLPPDVCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISKNLGQISLSNNRLTGSIPPTIANFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKVDFSNNKLSGPIAPEISQCKLLTFADLSRNELSGEIPNEITSMRILNYLNLSRNHLVGGIPASIARMQSLTSVDFSYNNLSGLVPGTGQFSYFNHTSFVGNPDLCGPYLGPCKDGVANSNYQQRLKGPLFASLKLLLVIGLLLCSIAFAVAAIIKARSLKKASESRAWKLTSFQRLDYTVDDVLDCLKEDNIIGKGGGGIVYKGVMPSGDHVAVKRLPAMSRGSSHDHGFNAEIRTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKSVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSIPRHEVMHVFYVAMLCVEEQAVERPTMREVIQILLEIPQPPCSKREDSTLPNSSPPPTPALAAALDIQTTGPENQKDQQQQQQPPADLLST 1658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6441830 6450464 + CmaCh03G008690.1 Cma03g00869 290440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00869 1658 Gene3D Phosphorylase Kinase; domain 1 1295 1407 - -
Cma03g00869 1658 SMART serkin_6 1330 1602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00869 1658 Gene3D - 64 473 - -
Cma03g00869 1658 MobiDBLite consensus disorder prediction 1635 1658 - -
Cma03g00869 1658 SMART LRR_typ_2 753 777 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 801 825 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 995 1018 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 1138 1162 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 1210 1233 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 970 994 IPR003591 -
Cma03g00869 1658 SMART LRR_typ_2 922 945 IPR003591 -
Cma03g00869 1658 Pfam Hexokinase 43 243 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cma03g00869 1658 PRINTS Hexokinase family signature 103 119 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 176 201 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 250 264 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 470 486 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 315 337 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 398 420 - -
Cma03g00869 1658 PRINTS Hexokinase family signature 227 243 - -
Cma03g00869 1658 Pfam Protein tyrosine and serine/threonine kinase 1332 1601 IPR001245 GO:0004672|GO:0006468
Cma03g00869 1658 MobiDBLite consensus disorder prediction 1609 1658 - -
Cma03g00869 1658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1452 1464 IPR008271 GO:0004672|GO:0006468
Cma03g00869 1658 SUPERFAMILY Actin-like ATPase domain 252 480 IPR043129 -
Cma03g00869 1658 SUPERFAMILY RNI-like 711 1032 - -
Cma03g00869 1658 ProSiteProfiles Hexokinase domain profile. 37 485 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cma03g00869 1658 ProSiteProfiles Protein kinase domain profile. 1330 1602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00869 1658 Pfam Hexokinase 252 480 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cma03g00869 1658 Gene3D Ribonuclease Inhibitor 1014 1256 IPR032675 -
Cma03g00869 1658 SUPERFAMILY Protein kinase-like (PK-like) 1322 1602 IPR011009 -
Cma03g00869 1658 Gene3D - 88 480 - -
Cma03g00869 1658 Gene3D Ribonuclease Inhibitor 663 818 IPR032675 -
Cma03g00869 1658 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 644 1617 - -
Cma03g00869 1658 Pfam Leucine rich repeat N-terminal domain 666 703 IPR013210 -
Cma03g00869 1658 SUPERFAMILY L domain-like 995 1255 - -
Cma03g00869 1658 ProSitePatterns Protein kinases ATP-binding region signature. 1336 1358 IPR017441 GO:0005524
Cma03g00869 1658 Gene3D Transferase(Phosphotransferase) domain 1 1408 1616 - -
Cma03g00869 1658 Gene3D Ribonuclease Inhibitor 913 1013 IPR032675 -
Cma03g00869 1658 Gene3D Ribonuclease Inhibitor 819 912 IPR032675 -
Cma03g00869 1658 SUPERFAMILY Actin-like ATPase domain 40 244 IPR043129 -
Cma03g00869 1658 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 644 1617 - -
Cma03g00869 1658 CDD NBD_sugar-kinase_HSP70_actin 104 264 - -
Cma03g00869 1658 Pfam Leucine Rich Repeat 924 945 IPR001611 GO:0005515
Cma03g00869 1658 Pfam Leucine Rich Repeat 803 821 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00869 Cma-Chr3:6441830 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma20g00098 Cma-Chr20:425567 Cma03g00869 Cma-Chr3:6441830 9.09E-110 dispersed
Cma03g00869 Cma-Chr3:6441830 Cma07g00607 Cma-Chr7:2629596 0 wgd
Cma03g00869 Cma-Chr3:6441830 Cma09g00630 Cma-Chr9:2969162 1.26E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68425 PF07714 PK_Tyr_Ser-Thr 3.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00869 - - csv:101219011 1778.45