Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00879 | ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTCTGGGATTACCGCTTCCCTCCAATCCCGCTCTTCTTTCTCACAAACCCAAGAAGCCAGTAGATTTATTCTCTTTTCCCGCCCCCGAATCCGAGCCCTCCTTGACTTTGGGCCTTTCCACACCCGAGACTTACCCGCTACCTGCCCCTGAAACGGCTGATTTATGTCGTCAACCCTCGCCTCACAGTGCGGTTTCTTCCTTCTCCGGCGGCAGGGTGAAGCGTGAAAGAGACGTTTTCGGTGAAGATATTGAAGAAGAGAAAGCTTGTTCTCGAGTCAGTGATGAAGATGAAGATGGTTCTATTGCTAGAAAAAAGCTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAGGACAGCTTCAAACTTCATAGCACCCTCAACCCTAAGCAAAAGCAGGCCTTAGCGAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGCAACGCTAACAGACGAAAACAGGAAGCTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCCCTGATCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCCTCCTGCGAGCGAACCGGTGGTGGAGCCACCGCCGTTAACGCCGACGGCAATTCCAAGAGCCCATTTTCGATGGCTCTCATGCCCCGGTTTGACAAAGCCTTCACCAAGCCTTCTGCTGCGTGCTAA | 801 | 50.81 | MGFDDLSNTGLLLGLGLPLPSNPALLSHKPKKPVDLFSFPAPESEPSLTLGLSTPETYPLPAPETADLCRQPSPHSAVSSFSGGRVKRERDVFGEDIEEEKACSRVSDEDEDGSIARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCATLTDENRKLQKELQELKALKLAQPLIMQMPAATLTMCPSCERTGGGATAVNADGNSKSPFSMALMPRFDKAFTKPSAAC | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6478531 | 6479798 | - | CmaCh03G008790.1 | Cma03g00879 | 290450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00879 | 266 | Gene3D | - | 111 | 178 | - | - | |
Cma03g00879 | 266 | Pfam | Homeodomain | 117 | 171 | IPR001356 | GO:0003677 | |
Cma03g00879 | 266 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 | 1 | 266 | - | - | |
Cma03g00879 | 266 | ProSitePatterns | 'Homeobox' domain signature. | 148 | 171 | IPR017970 | GO:0000981|GO:0006355 | |
Cma03g00879 | 266 | ProSiteProfiles | 'Homeobox' domain profile. | 113 | 173 | IPR001356 | GO:0003677 | |
Cma03g00879 | 266 | SUPERFAMILY | Homeodomain-like | 110 | 174 | IPR009057 | - | |
Cma03g00879 | 266 | Pfam | Homeobox associated leucine zipper | 173 | 207 | IPR003106 | GO:0006355|GO:0043565 | |
Cma03g00879 | 266 | SMART | HOX_1 | 115 | 177 | IPR001356 | GO:0003677 | |
Cma03g00879 | 266 | PANTHER | - | 1 | 266 | - | - | |
Cma03g00879 | 266 | Coils | Coil | 179 | 209 | - | - | |
Cma03g00879 | 266 | CDD | homeodomain | 117 | 174 | IPR001356 | GO:0003677 | |
Cma03g00879 | 266 | SMART | halz | 173 | 216 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00879 | Cma-Chr3:6478531 | Cma04g00846 | Cma-Chr4:4348299 | 6.24E-96 | dispersed | |
Cma03g00879 | Cma-Chr3:6478531 | Cma07g00621 | Cma-Chr7:2669609 | 4.67E-143 | wgd | |
Cma03g00879 | Cma-Chr3:6478531 | Cma09g00321 | Cma-Chr9:1324538 | 1.49E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34655 | PF00046 | Homeodomain | 5.40E-16 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00879 | K09338 | - | csv:101218782 | 414.461 |