Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00879 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTCTGGGATTACCGCTTCCCTCCAATCCCGCTCTTCTTTCTCACAAACCCAAGAAGCCAGTAGATTTATTCTCTTTTCCCGCCCCCGAATCCGAGCCCTCCTTGACTTTGGGCCTTTCCACACCCGAGACTTACCCGCTACCTGCCCCTGAAACGGCTGATTTATGTCGTCAACCCTCGCCTCACAGTGCGGTTTCTTCCTTCTCCGGCGGCAGGGTGAAGCGTGAAAGAGACGTTTTCGGTGAAGATATTGAAGAAGAGAAAGCTTGTTCTCGAGTCAGTGATGAAGATGAAGATGGTTCTATTGCTAGAAAAAAGCTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAGGACAGCTTCAAACTTCATAGCACCCTCAACCCTAAGCAAAAGCAGGCCTTAGCGAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGCAACGCTAACAGACGAAAACAGGAAGCTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCCCTGATCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCCTCCTGCGAGCGAACCGGTGGTGGAGCCACCGCCGTTAACGCCGACGGCAATTCCAAGAGCCCATTTTCGATGGCTCTCATGCCCCGGTTTGACAAAGCCTTCACCAAGCCTTCTGCTGCGTGCTAA 801 50.81 MGFDDLSNTGLLLGLGLPLPSNPALLSHKPKKPVDLFSFPAPESEPSLTLGLSTPETYPLPAPETADLCRQPSPHSAVSSFSGGRVKRERDVFGEDIEEEKACSRVSDEDEDGSIARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCATLTDENRKLQKELQELKALKLAQPLIMQMPAATLTMCPSCERTGGGATAVNADGNSKSPFSMALMPRFDKAFTKPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6478531 6479798 - CmaCh03G008790.1 Cma03g00879 290450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00879 266 Gene3D - 111 178 - -
Cma03g00879 266 Pfam Homeodomain 117 171 IPR001356 GO:0003677
Cma03g00879 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 266 - -
Cma03g00879 266 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Cma03g00879 266 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Cma03g00879 266 SUPERFAMILY Homeodomain-like 110 174 IPR009057 -
Cma03g00879 266 Pfam Homeobox associated leucine zipper 173 207 IPR003106 GO:0006355|GO:0043565
Cma03g00879 266 SMART HOX_1 115 177 IPR001356 GO:0003677
Cma03g00879 266 PANTHER - 1 266 - -
Cma03g00879 266 Coils Coil 179 209 - -
Cma03g00879 266 CDD homeodomain 117 174 IPR001356 GO:0003677
Cma03g00879 266 SMART halz 173 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00879 Cma-Chr3:6478531 Cma04g00846 Cma-Chr4:4348299 6.24E-96 dispersed
Cma03g00879 Cma-Chr3:6478531 Cma07g00621 Cma-Chr7:2669609 4.67E-143 wgd
Cma03g00879 Cma-Chr3:6478531 Cma09g00321 Cma-Chr9:1324538 1.49E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34655 PF00046 Homeodomain 5.40E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00879 K09338 - csv:101218782 414.461