Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00890 ATGAATAATGTTAATGGCAACAACTGTGACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAGCATGGAGCTTTCTTCTTCCTCTGCTACTGCTGTCTCCTCTTCAATTCCTGCAAACCTTTTTCACTCCCCATCTCAATTTAACTATGGCATTTGCTATGGTGTTGATGGAGAAAGTGGTGGCTTTTATTCACCATTGTCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAATCACTCAGCAGGCAGCATCCACAAGTGGCGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGCGCAACTATGGTGTCCCATCACTATGAAAGCAATGGCAGGGAAGCTATGGCTCTCAGCCTCGACAGCATTTTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGGGCATTTCTCATCCTTGAGAAGCCGTGAAGGGGTGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAGCACCCACCAGCAGTGATAGAGACTAAGAATTCTGGTCTGAATTGGGCTGTTCCTAGGATCTATGCTGTCGCTAATAATGGTTCGTTCGAGCAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGAGAATCTGGTCCCATGAATGCCATGGCTTATGGAGATTTACATTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTTACAGCCACACAGCATGCTTCACCTGCCTTGGCTGACTGTTCTGCTATGGATACAAAGAAAAGAGGCCATGAGAAGCTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACTTTTGGACAGAGAACCTCCCAGTACAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTGTGGGATAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCCAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCATATCAACTCTCCTGTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTCAGAAGAAGAAGCAGTGGATTCTCAAGAGGAGCCTCAATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGGCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCCGAAGCCTATGACATAGCAGCCATCAAATTTCGAGGAATGAATGCCGTTACTAATTTCAATATCACGAGGTATGATGTGGAGCGGATCATTGCAAGCAATACCCTTCTTAGTGGCGATCTAGCTAAGAGGAAGCAGCAGCCTGAGTTTGATAATGAATCACTTAGACAAACCCCTCCTACTCACAACAGCAATTCAGAAGCTCTTCATTTGCCCTCTCAGGGTAATCAAAGTGAATCAGAATGGAAGATGGCTCTTTATCAGTCGTCGTCGCAGCAGCTCATTCCAAAACCAAGATTGCCGTCTGCTATAACCGATGATGGATCACAACTCGGAGTCGAAGACTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATTGTGACCAGCTGCAGCTTTAGCAGCTCGAGGGAGGAGAGTCCAGACAAGACGAGCCTTTCAATGGTGTTCGGAATGCCTCAATCAACGTCTAAGCCATTTGCTACCTCTGGTAGTAGTAATATGAACTCCTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTGTTTGCTGCCTGGTCTGATAGTTGA 1896 46.62 MNNVNGNNCDWLGFSVSPNVSMELSSSSATAVSSSIPANLFHSPSQFNYGICYGVDGESGGFYSPLSAMPLKSDGSICSMESLSRQHPQVASSSTPKLEDFFGGATMVSHHYESNGREAMALSLDSIFCHQNPTHEPNNQPYGHFSSLRSREGVLQDSKVILPDGCNLQQQQQHPPAVIETKNSGLNWAVPRIYAVANNGSFEQKMVSFMSENGGESGPMNAMAYGDLHSLSLSMTMSPSSQSSCVTATQHASPALADCSAMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINSPVENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFNITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQTPPTHNSNSEALHLPSQGNQSESEWKMALYQSSSQQLIPKPRLPSAITDDGSQLGVEDSARMGAHFSNASSIVTSCSFSSSREESPDKTSLSMVFGMPQSTSKPFATSGSSNMNSSSWIASAQQLRAANCMSQLPVFAAWSDS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6544296 6547474 - CmaCh03G008900.1 Cma03g00890 290461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00890 631 MobiDBLite consensus disorder prediction 473 508 - -
Cma03g00890 631 CDD AP2 291 359 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 SUPERFAMILY DNA-binding domain 291 358 IPR016177 GO:0003677
Cma03g00890 631 CDD AP2 393 454 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 ProSiteProfiles AP2/ERF domain profile. 394 452 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 SUPERFAMILY DNA-binding domain 393 453 IPR016177 GO:0003677
Cma03g00890 631 SMART rav1_2 394 458 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 SMART rav1_2 292 364 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 Gene3D AP2/ERF domain 291 360 IPR036955 GO:0003700|GO:0006355
Cma03g00890 631 Gene3D AP2/ERF domain 394 454 IPR036955 GO:0003700|GO:0006355
Cma03g00890 631 ProSiteProfiles AP2/ERF domain profile. 292 358 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 MobiDBLite consensus disorder prediction 483 508 - -
Cma03g00890 631 Pfam AP2 domain 394 444 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 Pfam AP2 domain 292 350 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 629 - -
Cma03g00890 631 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 629 - -
Cma03g00890 631 PRINTS Ethylene responsive element binding protein signature 293 304 IPR001471 GO:0003700|GO:0006355
Cma03g00890 631 PRINTS Ethylene responsive element binding protein signature 434 454 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01756 Cma-Chr1:11818737 Cma03g00890 Cma-Chr3:6544296 1.08E-159 dispersed
Cma03g00890 Cma-Chr3:6544296 Cma05g00122 Cma-Chr5:533391 8.49E-176 dispersed
Cma20g00072 Cma-Chr20:315450 Cma03g00890 Cma-Chr3:6544296 3.26E-110 dispersed
Cma12g00614 Cma-Chr12:3226740 Cma03g00890 Cma-Chr3:6544296 1.22E-177 wgd
Cma03g00890 Cma-Chr3:6544296 Cma07g00631 Cma-Chr7:2740186 0 wgd
Cma03g00890 Cma-Chr3:6544296 Cma09g00308 Cma-Chr9:1272511 2.41E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34657 PF00847 AP2 1.20E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00890 K09285 - csv:101203323 1102.43