Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00911 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCCTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGGCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAGGTTCTTCTCCAAGGCAATGTATTCTGA 978 44.17 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTVLQNEEIVDAKPLAISNGTTRTNGPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQGNVF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6605105 6611105 + CmaCh03G009110.1 Cma03g00911 290482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00911 325 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cma03g00911 325 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cma03g00911 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cma03g00911 325 Gene3D - 135 213 IPR036388 -
Cma03g00911 325 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 SMART sant 23 78 IPR001005 -
Cma03g00911 325 SMART h15plus2 135 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cma03g00911 325 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cma03g00911 325 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cma03g00911 325 CDD SANT_TRF 25 76 - -
Cma03g00911 325 Coils Coil 259 296 - -
Cma03g00911 325 Gene3D - 19 78 - -
Cma03g00911 325 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00911 Cma-Chr3:6605105 Cma14g01253 Cma-Chr14:9933174 5.50E-35 dispersed
Cma04g00444 Cma-Chr4:2269979 Cma03g00911 Cma-Chr3:6605105 5.66E-06 dispersed
Cma16g00312 Cma-Chr16:1455421 Cma03g00911 Cma-Chr3:6605105 8.79E-77 wgd
Cma03g00911 Cma-Chr3:6605105 Cma04g00443 Cma-Chr4:2265920 2.27E-36 wgd
Cma03g00911 Cma-Chr3:6605105 Cma07g00647 Cma-Chr7:2809788 3.61E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34660 PF00538 Linker_histone 9.00E-11 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00911 K09422 - csv:101202913 471.085