Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00911 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCCTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGGCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAGGTTCTTCTCCAAGGCAATGTATTCTGA 978 44.17 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTVLQNEEIVDAKPLAISNGTTRTNGPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQGNVF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6605105 6611105 + CmaCh03G009110.1 Cma03g00911 290482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00911 325 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cma03g00911 325 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cma03g00911 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cma03g00911 325 Gene3D - 135 213 IPR036388 -
Cma03g00911 325 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 SMART sant 23 78 IPR001005 -
Cma03g00911 325 SMART h15plus2 135 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cma03g00911 325 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma03g00911 325 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cma03g00911 325 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cma03g00911 325 CDD SANT_TRF 25 76 - -
Cma03g00911 325 Coils Coil 259 296 - -
Cma03g00911 325 Gene3D - 19 78 - -
Cma03g00911 325 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00911 K09422 MYBP; transcription factor MYB, plant - csv:101202913 471.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00911 Cma-Chr3:6605105 Cma14g01253 Cma-Chr14:9933174 5.50E-35 dispersed
Cma04g00444 Cma-Chr4:2269979 Cma03g00911 Cma-Chr3:6605105 5.66E-06 dispersed
Cma16g00312 Cma-Chr16:1455421 Cma03g00911 Cma-Chr3:6605105 8.79E-77 wgd
Cma03g00911 Cma-Chr3:6605105 Cma04g00443 Cma-Chr4:2265920 2.27E-36 wgd
Cma03g00911 Cma-Chr3:6605105 Cma07g00647 Cma-Chr7:2809788 3.61E-180 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00312 . 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 61.2 2.1e-77 286.6
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 6.6e-63 238.4
Cma07g00647 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.2 3.4e-59 226.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 8.3e-66 248.1
Cma07g00647 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 52.9 1.8e-65 246.9
Cma07g00647 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 1.1e-57 221.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 4.1e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34660 PF00538 Linker_histone 9.00E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00911 Cma_Chr03 FPKM 9.36779 9.649885 14.45074 14.327656 10.068964 8.74489 8.861824 20.933598 21.366041 20.783165