Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00916 ATGAACCCAATTTCACAAGGCATCGAAATGCACTCCGGTAAAGACCGTACTAAGAAAATGAAGGAAACGGAAGCGTTTTCCGTTTGGCAAAATCTCGGCGCTGTCGACACCATTTATGAAGAAGAATATGAATTTTCCTCCCCCTCCTCTTCTTCTCCCTCTCCTCCTCTCTCTCCGCCGCCTCCTCCTCCGCATCTCCACTCTACAGTTCAGCAATGGTCTAAGGTAACTGGATTTAAGACAGATGTTTGTATTCGAGTTAATGGGAAGTGTTTCCATCTCCACAAGGATCCTCTGGCGTCTAAATGCCCGTATTTAAAGCGACAATTGGCCACTACGTTCGACGTAACGCTCACTCCACCGCTCAAAATTACGCCCCAAACCTTCCTTATGGTGGCCGATTTTTGCTACGGTGCCCCGGTTCATATAACGCCATTTAACGTCGCCGCACTAAGAACCGCAGCGGAGTTGCTAGAGATGTCGGAGACGGAGAATAATGCCGACGGCGACAACTTGGTGAGTGTGACGGAGAAATACTTCCGACGAGTTGTGGCCGTCAACCGAGACTACGCGTCGGTGGTGTTCCGGTCGTGCTTGGAGTTGCTGCCGGAGGCCGAAACGATGGCGGTTTTGGCTAGTAGATGTCTTGAAGCGTGGAATTTGGAGGATGAGGGCGATGGCGATGGCGATATTACTTGCTTTGAAGACTTCAAATCCGTGGAGGTCGAGAACTTTATGGTCCTGGCTTCGTCACTGAACCGCAGGCTTAAATGCCACGACCTAATCTACAAGCTCGCTCTTCTGTATCTCCAAGGATATGGCGGGAAAATCACAGATAATCAAAAGGTACTAATATGCAATTTCATAGACTGCGACAAGCTATCCCCCAAGCTACTCCTACACGCAGTCCAAAACCCAGTAATGCCGCTGAGATTCGTGGTTCGAGCGATGCTAATCGAGCAGCTCAACACCCGTCACTCCATTTTCTCTGGTGCCGCTACTGCCAGCACCAAACCCCAAATCCCGCGTCCAATTTCCAAGGACCCCCTCACGCTCGGCGCAATTCTCAAGCGAGACGCGGCTGCTCGTGAGTCCGCCAAGTTGAAGGCTGCGATGCAGGCTACAAACTCTCGCATACGAACGCTGGAAACCCAACTGTCCACCATGAAGAAGAAGCTCCAAGTGTCTGATGAGAAACAGAGGAGTCTGTCCGAGGATGCTGGCCGTGGCCGTTCCGCTAGCTTTCATTACGGCGTGGATAAGAGTAATAGTAGTAAGGGCGTGGCTAGAGGCCAACGAGGGTCCAGTTCCTCCTCTGTTTTCCGGCTGAGCGCTGATTTCAAGACGGATTATTATAAGTTCGGCGTTGGGTGCAAGCCGTCATCGGATCGTGGGTCGTCGTCGAGTCACGATGGGGGTCGGAAATCGGGGAGAAGTATTGGGCAGAGATTGATAAATGGGATTAAGAATGTGTTTCGGGTGTCGAGTTTAGGAGAGGCGGAGAGCAAAGTTCAGAGCAGAGATAAAGAAGACGAAGGGGAAGATTTGTGCGAAGAAGATGAAGACAATGATGAGATTGTTGTGATGAGAAGAAATCATCTTTATGTTAATTAG 1614 50.31 MNPISQGIEMHSGKDRTKKMKETEAFSVWQNLGAVDTIYEEEYEFSSPSSSSPSPPLSPPPPPPHLHSTVQQWSKVTGFKTDVCIRVNGKCFHLHKDPLASKCPYLKRQLATTFDVTLTPPLKITPQTFLMVADFCYGAPVHITPFNVAALRTAAELLEMSETENNADGDNLVSVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAVLASRCLEAWNLEDEGDGDGDITCFEDFKSVEVENFMVLASSLNRRLKCHDLIYKLALLYLQGYGGKITDNQKVLICNFIDCDKLSPKLLLHAVQNPVMPLRFVVRAMLIEQLNTRHSIFSGAATASTKPQIPRPISKDPLTLGAILKRDAAARESAKLKAAMQATNSRIRTLETQLSTMKKKLQVSDEKQRSLSEDAGRGRSASFHYGVDKSNSSKGVARGQRGSSSSSVFRLSADFKTDYYKFGVGCKPSSDRGSSSSHDGGRKSGRSIGQRLINGIKNVFRVSSLGEAESKVQSRDKEDEGEDLCEEDEDNDEIVVMRRNHLYVN 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6626427 6629131 + CmaCh03G009160.1 Cma03g00916 290487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00916 537 MobiDBLite consensus disorder prediction 45 69 - -
Cma03g00916 537 Coils Coil 365 399 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 417 435 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 499 523 - -
Cma03g00916 537 ProSiteProfiles NPH3 domain profile. 239 323 IPR027356 -
Cma03g00916 537 ProSiteProfiles BTB domain profile. 81 145 IPR000210 GO:0005515
Cma03g00916 537 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 66 501 - -
Cma03g00916 537 SUPERFAMILY POZ domain 68 162 IPR011333 -
Cma03g00916 537 Gene3D Potassium Channel Kv1.1; Chain A 65 181 IPR011333 -
Cma03g00916 537 Pfam BTB/POZ domain 80 163 IPR000210 GO:0005515
Cma03g00916 537 PANTHER OS12G0117600 PROTEIN 66 501 IPR043454 -
Cma03g00916 537 MobiDBLite consensus disorder prediction 461 475 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 458 480 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 52 67 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 389 435 - -
Cma03g00916 537 MobiDBLite consensus disorder prediction 392 406 - -
Cma03g00916 537 SMART BTB_4 81 175 IPR000210 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00916 Cma07g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00916 Cma-Chr3:6626427 Cma19g00873 Cma-Chr19:8076432 7.41E-14 dispersed
Cma03g00916 Cma-Chr3:6626427 Cma11g01281 Cma-Chr11:8573756 5.36E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34661 PF00651 BTB 4.80E-07 CL0033 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00916 - - bhj:120074733 775.007