Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00917 | ATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCAACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACTCCTTTCAAACGGCTTCCTTTCTACTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTATGTACCGCCGATGGCAGCGTCTTCGAGATAATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTAAAGCAGGAGGATCTAATTCCGCTGATTTTCCACAAGAATTCTGAAGGTGAATTCCAGTGCCCTGTACTAAACAAAGTTTTTACGGAGTTCACACACATGGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGCAGGACATTATAACCATTCAGAACCCTACTGCGTTTGATAGTAAGGTTCTCCTGGATTTTGATCATGTGAAGAATAGCCTGAAAGTTGATGATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATTTCATAAATGTGTCGGGCGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCACTTCATGGCGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGAGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGACTCCAAGGAGAATGCAAAAGGAGAGGAGAAACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCGGTACATGGTAGAAGTGCTGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCGTCCCGATCCTTCACATCTACAGCTTATGATCCAGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAATCCGAAGAAGAAAGGATACGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTGCATTGTGATATTACTCCGAGGGCATGTGAGAATTTCATCACGCTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGAGGGGATTCTATATGGGGAAAGCCCTTCAACGATGAACTGAACTCTAAGTTGCTTCATTCTGGAAGGGGTATTGTCAGTATGGCAAATAGTGGCCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCTAATCACTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCCATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGCGTCACAGTTTTTGTCAATCCATACTCAGAACCCGATGAAGAAGAGGAAGAAAAGCAAAAAGACGAGAAAAATGTGGAGGATGAGGAAAACGATAAGGTTGGATCGTGGTATAGTAATCCAGGCACCGGGGTAGCTGAATATGGAGCTGCTGGTGGTGGTGGTGTAGGGAAATATTTAAAAGCAAGGAATGCCCAATCCAAATCCCCTGCTGTTGATGCTGGTGTAAGACAAACTACTTCAACCAAAAAAAGGACAGCTGCTGGAGAATTCAAAGACTTCTCTTCGTGGGTGCATTTGACCCAGTTAGTATTGGAATGCATTACTGACGACAAAAGTTCATTTCACAAACTCTTGGAGTTGTTGATTATGCCCAAGAAGAACTCCCCACCTGCCCCAAAACCCAAAGGGAGAGAGAGAGAGAGAGCAAAGAAAAAAGAAAAAAGAAAAATGAAAGTGGGAAAAGCAGTATTCAGATATGAATCCTCTTTATCCGACACTGATTCTGTTGTTCAATGTATGAGCTTGAAAGTAAAGAGGGATCTGCCAAAAAATGGCGTGTCTGCTAGCTCTTCTACTTCCACTGTATGTATCTTACTTTGCTCATTTACTGTCGCTGATTGCTTTCAAGTATCAACCTTATCCCACACAGATAGAGCTATTTTGAAGTCACTTGTAGAAGTTTTTACTCTGTTCTTCGCCGTTGGCACCAGATACGACTATTCCTCACCTCAAATTACTCATGTTCAGTCTTCCCAATTTATTGATTGA | 2262 | 42.79 | MGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHMVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRQDIITIQNPTAFDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYFINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKEREAALAAILAARSRIKEDSKENAKGEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTAYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGDSIWGKPFNDELNSKLLHSGRGIVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEYGAAGGGGVGKYLKARNAQSKSPAVDAGVRQTTSTKKRTAAGEFKDFSSWVHLTQLVLECITDDKSSFHKLLELLIMPKKNSPPAPKPKGRERERAKKKEKRKMKVGKAVFRYESSLSDTDSVVQCMSLKVKRDLPKNGVSASSSTSTVCILLCSFTVADCFQVSTLSHTDRAILKSLVEVFTLFFAVGTRYDYSSPQITHVQSSQFID | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6629564 | 6633675 | + | CmaCh03G009170.1 | Cma03g00917 | 290488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00917 | 753 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 390 | 402 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 433 | 448 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 364 | 379 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 448 | 460 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 461 | 476 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | MobiDBLite | consensus disorder prediction | 503 | 537 | - | - | |
Cma03g00917 | 753 | CDD | RING-Ubox_PPIL2 | 38 | 110 | IPR026951 | - | |
Cma03g00917 | 753 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 95 | IPR013083 | - | |
Cma03g00917 | 753 | PANTHER | RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 | 2 | 592 | - | - | |
Cma03g00917 | 753 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 354 | 501 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | SUPERFAMILY | Cyclophilin-like | 350 | 518 | IPR029000 | - | |
Cma03g00917 | 753 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842|GO:0016567 | |
Cma03g00917 | 753 | SUPERFAMILY | RING/U-box | 37 | 104 | - | - | |
Cma03g00917 | 753 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 592 | IPR044666 | - | |
Cma03g00917 | 753 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 385 | 402 | IPR020892 | GO:0003755|GO:0006457 | |
Cma03g00917 | 753 | MobiDBLite | consensus disorder prediction | 623 | 645 | - | - | |
Cma03g00917 | 753 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 350 | 501 | IPR002130 | GO:0000413|GO:0003755 | |
Cma03g00917 | 753 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842|GO:0016567 | |
Cma03g00917 | 753 | CDD | cyclophilin_RING | 350 | 507 | - | - | |
Cma03g00917 | 753 | Gene3D | - | 330 | 515 | IPR029000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01723 | Cma-Chr1:11685309 | Cma03g00917 | Cma-Chr3:6629564 | 2.40E-42 | dispersed | |
Cma03g00917 | Cma-Chr3:6629564 | Cma14g01990 | Cma-Chr14:13972262 | 1.55E-57 | dispersed | |
Cma03g00917 | Cma-Chr3:6629564 | Cma07g00649 | Cma-Chr7:2826784 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00917 | K10598 | - | csv:101204462 | 1043.11 |