Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00917 ATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCAACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACTCCTTTCAAACGGCTTCCTTTCTACTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTATGTACCGCCGATGGCAGCGTCTTCGAGATAATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTAAAGCAGGAGGATCTAATTCCGCTGATTTTCCACAAGAATTCTGAAGGTGAATTCCAGTGCCCTGTACTAAACAAAGTTTTTACGGAGTTCACACACATGGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGCAGGACATTATAACCATTCAGAACCCTACTGCGTTTGATAGTAAGGTTCTCCTGGATTTTGATCATGTGAAGAATAGCCTGAAAGTTGATGATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATTTCATAAATGTGTCGGGCGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCACTTCATGGCGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGAGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGACTCCAAGGAGAATGCAAAAGGAGAGGAGAAACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCGGTACATGGTAGAAGTGCTGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCGTCCCGATCCTTCACATCTACAGCTTATGATCCAGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAATCCGAAGAAGAAAGGATACGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTGCATTGTGATATTACTCCGAGGGCATGTGAGAATTTCATCACGCTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGAGGGGATTCTATATGGGGAAAGCCCTTCAACGATGAACTGAACTCTAAGTTGCTTCATTCTGGAAGGGGTATTGTCAGTATGGCAAATAGTGGCCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCTAATCACTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCCATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGCGTCACAGTTTTTGTCAATCCATACTCAGAACCCGATGAAGAAGAGGAAGAAAAGCAAAAAGACGAGAAAAATGTGGAGGATGAGGAAAACGATAAGGTTGGATCGTGGTATAGTAATCCAGGCACCGGGGTAGCTGAATATGGAGCTGCTGGTGGTGGTGGTGTAGGGAAATATTTAAAAGCAAGGAATGCCCAATCCAAATCCCCTGCTGTTGATGCTGGTGTAAGACAAACTACTTCAACCAAAAAAAGGACAGCTGCTGGAGAATTCAAAGACTTCTCTTCGTGGGTGCATTTGACCCAGTTAGTATTGGAATGCATTACTGACGACAAAAGTTCATTTCACAAACTCTTGGAGTTGTTGATTATGCCCAAGAAGAACTCCCCACCTGCCCCAAAACCCAAAGGGAGAGAGAGAGAGAGAGCAAAGAAAAAAGAAAAAAGAAAAATGAAAGTGGGAAAAGCAGTATTCAGATATGAATCCTCTTTATCCGACACTGATTCTGTTGTTCAATGTATGAGCTTGAAAGTAAAGAGGGATCTGCCAAAAAATGGCGTGTCTGCTAGCTCTTCTACTTCCACTGTATGTATCTTACTTTGCTCATTTACTGTCGCTGATTGCTTTCAAGTATCAACCTTATCCCACACAGATAGAGCTATTTTGAAGTCACTTGTAGAAGTTTTTACTCTGTTCTTCGCCGTTGGCACCAGATACGACTATTCCTCACCTCAAATTACTCATGTTCAGTCTTCCCAATTTATTGATTGA 2262 42.79 MGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHMVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRQDIITIQNPTAFDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYFINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKEREAALAAILAARSRIKEDSKENAKGEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTAYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGDSIWGKPFNDELNSKLLHSGRGIVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEYGAAGGGGVGKYLKARNAQSKSPAVDAGVRQTTSTKKRTAAGEFKDFSSWVHLTQLVLECITDDKSSFHKLLELLIMPKKNSPPAPKPKGRERERAKKKEKRKMKVGKAVFRYESSLSDTDSVVQCMSLKVKRDLPKNGVSASSSTSTVCILLCSFTVADCFQVSTLSHTDRAILKSLVEVFTLFFAVGTRYDYSSPQITHVQSSQFID 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6629564 6633675 + CmaCh03G009170.1 Cma03g00917 290488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00917 753 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 MobiDBLite consensus disorder prediction 503 537 - -
Cma03g00917 753 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Cma03g00917 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 95 IPR013083 -
Cma03g00917 753 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 592 - -
Cma03g00917 753 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 SUPERFAMILY Cyclophilin-like 350 518 IPR029000 -
Cma03g00917 753 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Cma03g00917 753 SUPERFAMILY RING/U-box 37 104 - -
Cma03g00917 753 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 592 IPR044666 -
Cma03g00917 753 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Cma03g00917 753 MobiDBLite consensus disorder prediction 623 645 - -
Cma03g00917 753 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Cma03g00917 753 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Cma03g00917 753 CDD cyclophilin_RING 350 507 - -
Cma03g00917 753 Gene3D - 330 515 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01723 Cma-Chr1:11685309 Cma03g00917 Cma-Chr3:6629564 2.40E-42 dispersed
Cma03g00917 Cma-Chr3:6629564 Cma14g01990 Cma-Chr14:13972262 1.55E-57 dispersed
Cma03g00917 Cma-Chr3:6629564 Cma07g00649 Cma-Chr7:2826784 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00917 K10598 - csv:101204462 1043.11