Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00918 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGAGCAATCTTACAATTCCAGCAGGACCAATTCTAGCAGCTCTAGATCTTCCAGACAGAACCAATATCAGTACCATCAACAGGACGACGACCAAGAATGCTACAACCTTCTCATGGATGACGAAGATTTCTCATCCTCTAGTAATTCTAGACAATACTATAATCCATACCATCCACACCCACCTTCCACCGCCACTCCCACACCCATCGATCAATTCTCATACGTCTCCCCCTCTCCGGACATCAACTTCGAATTTTCCGGCAGGTGGGCTGTCGATATTCTCCTTGAGACGGCCAGGGCAATTTCTGACAGGAACAGCTCCCGCGTTCACCAACTCATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATTGCGCTTTGGCCTCTGCCTCAGAGAAAACATGCTCATTCGATTCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAGGCCTTAGAAGGCGAATCGAAGCTACACATAATCGATATCAGTAGCACGTATTGCACTCAGTGGCCTACTTTGCTAGAAGCTCTCGCGACTCGTACCGACGACACGCCGCACCTTCGTCTCACCACGATCATCACCACCAAACCAGGCACTGGTACCGGAATATCTGCATCTCAAAAAGTAATGAAGGAAATAGGTACGAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCAATGCGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTAGCCAAATTAGACATCAAAGAAGACGAGGCACTTGCCATCAACTGCGTCGGAGCCTTACGTTCCATTGCGGCGATTAACAACCGCCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGCCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGACTGACTTTCTGAGAGGTTTCCAAGAATGTTTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAAAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTCGAGAGAGCTGCCGGTAGGTCAATCGTGGACCTGGTGGCTTGCTCGGCGGCGGACTCGGTTGAGAGGCGGGAATCGGCGGTGAGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGACCGGTGACGTTCAGCGACGAAGTATGCGACGACGTCAGAGCGCTGTTGAGGAGATACAAGGAAGGTTGGGCAATGACACAGAACTCCGACGTCGCCGGAATCTTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1455 50.72 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYQYHQQDDDQECYNLLMDDEDFSSSSNSRQYYNPYHPHPPSTATPTPIDQFSYVSPSPDINFEFSGRWAVDILLETARAISDRNSSRVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIITTKPGTGTGISASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLAKLDIKEDEALAINCVGALRSIAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGTDFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRSIVDLVACSAADSVERRESAVRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQNSDVAGIFLTWKEQPVVWASAWRP 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6636169 6637623 + CmaCh03G009180.1 Cma03g00918 290489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00918 484 MobiDBLite consensus disorder prediction 15 39 - -
Cma03g00918 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 483 IPR005202 -
Cma03g00918 484 PANTHER PROTEIN SHORT-ROOT 1 483 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cma03g00918 484 MobiDBLite consensus disorder prediction 55 70 - -
Cma03g00918 484 ProSiteProfiles GRAS family profile. 93 483 IPR005202 -
Cma03g00918 484 Pfam GRAS domain family 103 483 IPR005202 -
Cma03g00918 484 MobiDBLite consensus disorder prediction 55 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00539 Cma-Chr2:2967857 Cma03g00918 Cma-Chr3:6636169 0 dispersed
Cma03g00918 Cma-Chr3:6636169 Cma08g00189 Cma-Chr8:1066984 1.44E-150 dispersed
Cma08g00795 Cma-Chr8:4811559 Cma03g00918 Cma-Chr3:6636169 5.48E-42 dispersed
Cma03g00918 Cma-Chr3:6636169 Cma07g00650 Cma-Chr7:2839388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34662 PF03514 GRAS 8.50E-104 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00918 - - csv:101204711 844.343