Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00932 ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGCTGCAGCGAGTCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGAGACCTCCGAGGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTTATGTCCTTCATCTCCGCTGTCCCCGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGTGGACGCACTGTTAATCCCGTCAACGGCGCCGTTGGCCTTCTATGGACTGGCAACTGGCATGTTTGTCAAGCCGCCGTTGACACCGTCTTACGAGGCGGCACGTTGCGGCCGATCAACGATTTCCTCGCCGCTGGTTCTCCCAATCTTTCCTCCGACGACACTTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTACGAGATTCTTATCCCAATTCACGATTCTCCAACTCCCGATCCAGGCTCTCTCCGAAACGCAAGCGATCCGAGGAATCATCCACCAAGAACCAACTGAACGACCTAAATCTCCGGTTGACTCCTACTTTTGTATCCAAATCAACCCCGCGCGCCGCTACACCGTCAATGAATTCTGAGGAATCCGAGACCACTACGTGCTTCGAGAGTGGCCTGGGGGATCACCATCACTACTATCCAGAAGAAGGAACCGCCCAACGGAAGCTTCTTAATTTGTTCGTCTAA 699 54.51 MSCNGCRVLRKGCSESCILRPCLQWIETSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLSSDDTSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESSTKNQLNDLNLRLTPTFVSKSTPRAATPSMNSEESETTTCFESGLGDHHHYYPEEGTAQRKLLNLFV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6676809 6678481 + CmaCh03G009320.1 Cma03g00932 290503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00932 232 MobiDBLite consensus disorder prediction 146 206 - -
Cma03g00932 232 MobiDBLite consensus disorder prediction 168 206 - -
Cma03g00932 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Cma03g00932 232 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cma03g00932 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
Cma03g00932 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00932 Cma07g00659 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00932 Cma-Chr3:6676809 Cma14g00811 Cma-Chr14:4107612 8.02E-54 dispersed
Cma01g01793 Cma-Chr1:11993723 Cma03g00932 Cma-Chr3:6676809 6.26E-65 wgd
Cma03g00932 Cma-Chr3:6676809 Cma07g00659 Cma-Chr7:2878344 2.20E-148 wgd
Cma03g00932 Cma-Chr3:6676809 Cma09g00281 Cma-Chr9:1154490 7.78E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34665 PF03195 LOB 3.30E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00932 - - csv:101206615 416.387