Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00932 | ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGCTGCAGCGAGTCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGAGACCTCCGAGGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTTATGTCCTTCATCTCCGCTGTCCCCGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGTGGACGCACTGTTAATCCCGTCAACGGCGCCGTTGGCCTTCTATGGACTGGCAACTGGCATGTTTGTCAAGCCGCCGTTGACACCGTCTTACGAGGCGGCACGTTGCGGCCGATCAACGATTTCCTCGCCGCTGGTTCTCCCAATCTTTCCTCCGACGACACTTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTACGAGATTCTTATCCCAATTCACGATTCTCCAACTCCCGATCCAGGCTCTCTCCGAAACGCAAGCGATCCGAGGAATCATCCACCAAGAACCAACTGAACGACCTAAATCTCCGGTTGACTCCTACTTTTGTATCCAAATCAACCCCGCGCGCCGCTACACCGTCAATGAATTCTGAGGAATCCGAGACCACTACGTGCTTCGAGAGTGGCCTGGGGGATCACCATCACTACTATCCAGAAGAAGGAACCGCCCAACGGAAGCTTCTTAATTTGTTCGTCTAA | 699 | 54.51 | MSCNGCRVLRKGCSESCILRPCLQWIETSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLSSDDTSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESSTKNQLNDLNLRLTPTFVSKSTPRAATPSMNSEESETTTCFESGLGDHHHYYPEEGTAQRKLLNLFV | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6676809 | 6678481 | + | CmaCh03G009320.1 | Cma03g00932 | 290503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00932 | 232 | MobiDBLite | consensus disorder prediction | 146 | 206 | - | - | |
Cma03g00932 | 232 | MobiDBLite | consensus disorder prediction | 168 | 206 | - | - | |
Cma03g00932 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 232 | - | - | |
Cma03g00932 | 232 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Cma03g00932 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 232 | - | - | |
Cma03g00932 | 232 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00932 | Cma07g00659 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00932 | Cma-Chr3:6676809 | Cma14g00811 | Cma-Chr14:4107612 | 8.02E-54 | dispersed | |
Cma01g01793 | Cma-Chr1:11993723 | Cma03g00932 | Cma-Chr3:6676809 | 6.26E-65 | wgd | |
Cma03g00932 | Cma-Chr3:6676809 | Cma07g00659 | Cma-Chr7:2878344 | 2.20E-148 | wgd | |
Cma03g00932 | Cma-Chr3:6676809 | Cma09g00281 | Cma-Chr9:1154490 | 7.78E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34665 | PF03195 | LOB | 3.30E-25 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00932 | - | - | csv:101206615 | 416.387 |